Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme685108g00001 GAGCATGCTGACGAGGAGCATGAGCATGCAGAGATGGCTGATGTGGAAGAAGAGGAGCACCGTGAAGTTGTGAAGGAGAGGCGAAAGCGAAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTTGGTGAAGTTGGCGTTGTGACTGAGGTCAGGCTAATGATGAATCCTCAGACAAAAAAGAACAAGGGATTTGCATTCTTGCGGTTTGAAAATGTGG 253 0.4625 EHADEEHEHAEMADVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENV 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme685108g00001 84 MobiDBLite consensus disorder prediction 1 21 - -
Trme685108g00001 84 Gene3D - 1 84 IPR012677 -
Trme685108g00001 84 SUPERFAMILY RNA-binding domain, RBD 27 83 IPR035979 GO:0003676
Trme685108g00001 84 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 83 IPR000504 GO:0003723
Trme685108g00001 84 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 4 84 - -
Trme685108g00001 84 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme685108g00001 Trme-Chr685108 1 253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme685108g00001 29 83 Eukaryotic Initiation Factors Gene Family AT4G34110 41.818 5.10e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme685108g00001 - - gmx:100777658 114.005