Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6840g00001 ATGGCGAGAGGTTTCAAACTCAAGTTGGGTGCAGGAGCTTACGGCTCCGTGTTCAAGGGGAACCTATGTAGCGGACCCTCTGTTGCAATCAAGATGTTGAGTGAATCGAAAGGTAAAGGGCAAGATTTCATCAATGAAGTTGCAACTATTGGAAGAATACATCATTTGAATGTGGTACAATTAATTGGATTTTGTGTTGAGGGATCAAAACGTGCTATTGTTTATGAATTCATGCCCAACGGATCTCTTGACAAAATTATTTTTTCTAAAGAAGGAAGCATTAGTATAAACTATAAAAGAATATTTGAAATATCAGTTGGAATAGCTCGTGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTTTACATTTTGATATAAAGCCTCATAACATACTTCTTGATGAGAACTTGACCCCAAAAATATCTGACTTCGGGCTCGCTAAACTATATCCAGTAGAAAATAGCATCATCACAATGACCAAAGAAAGAGGTACAAATGGATATATGGCTCCAGAATTGTCATACAATAATATTGGGGGTGTGTCCTATAAGGCTGATGTTTATAGCTTCGGAATGCTTTTGATGGAGATGATTTACTGTCCCCATTGGATCTATGATCAACTTGGAAAAGAGCAAGAAATAGAAATAGATGTTACTAAAGAGGATATGGAAATAGTAAAGAAGATGATTATAGTCTCACTTTGGTGTATACAATGGAAACCAGATGATCGCCCCGCAATGAACAAAGTGGTGGAGATGCTAGAAGGAGATATTGAAAGCCTTAATATGCCTCCAAAGCCAATCATTTTCCCACATGAAACGATTGCTGAGAATCAAAGAAACAACTAA 855 0.3731 MARGFKLKLGAGAYGSVFKGNLCSGPSVAIKMLSESKGKGQDFINEVATIGRIHHLNVVQLIGFCVEGSKRAIVYEFMPNGSLDKIIFSKEGSISINYKRIFEISVGIARGIAYLHHGCEMKILHFDIKPHNILLDENLTPKISDFGLAKLYPVENSIITMTKERGTNGYMAPELSYNNIGGVSYKADVYSFGMLLMEMIYCPHWIYDQLGKEQEIEIDVTKEDMEIVKKMIIVSLWCIQWKPDDRPAMNKVVEMLEGDIESLNMPPKPIIFPHETIAENQRNN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6840g00001 284 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6840g00001 284 Gene3D Transferase(Phosphotransferase) domain 1 82 265 - -
Trme6840g00001 284 PIRSF ILK 5 265 - -
Trme6840g00001 284 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 276 IPR045874 GO:0004672
Trme6840g00001 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Trme6840g00001 284 SUPERFAMILY Protein kinase-like (PK-like) 8 257 IPR011009 -
Trme6840g00001 284 ProSiteProfiles Protein kinase domain profile. 3 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6840g00001 284 Gene3D Phosphorylase Kinase; domain 1 4 81 - -
Trme6840g00001 284 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trme6840g00001 284 FunFam Os07g0541700 protein 78 167 - -
Trme6840g00001 284 Pfam Protein tyrosine and serine/threonine kinase 7 256 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6840g00001 Trme-Chr6840 372 1420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6840g00001 1 281 Receptor kinase-like Gene Family AT1G66910 48.684 1.63e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme6840g00001 PK_Tyr_Ser-Thr 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6840g00001 - - gmx:100305367 439.884