Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme68340g00001 CAGGGACAACCTGCAGCATATACGATATGGAAATCTGTTCAACAATGGACCGATAAGTCGGTTCCAAGAACAGGGGTTATATTGCCTGATCTTACTTCTGGGGGTGAAAAAGTACCTGTTTGTCTTGTGAATGATGTTGATAACGAGAAGGGCCCTGCATATTTCACTTACATCCCTACTCTCAAGAATCCGAGGCCAGTTGCTCCTTTGGAGTCTTCTGCTGGATGTTCTTGTATTGGTGGTTGTCAACCTGGAAATTTTAACTGTCCCTGCATTCAAAAGAACGGAGGTGGCCTGAAATTTCGTTTGGAGGTGTTCAGAACCAACAATAAAGGATGGGGTCTAAGATCGTGGGATGCTATTCGTGCTGGAACTTTTATATGTGAGTATGCAGGAGAAGTCATTGACAATGCTAGAGCTGAGATGCTTGGTGGTGAAAATGATGATGAATACATTTTTGATTCTACTCGCATTTATCAGCAACTGGAAGTTTTTCCTGCTGACATCGAAGCTCCAAAGATCCCGTCTCCGCTGTATATAACAGCGAAAAATGAAGGGAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTGTGGCGTCCAATTGTACGTGAAAATAAGAATGAATCAGATCTCCACATTGCTTTCTATGCAATTAGACACATCCCTCCTATGATGGAGTTAACTTATGATTATGGGATAAATCTTCCTCT 722 0.4211 QGQPAAYTIWKSVQQWTDKSVPRTGVILPDLTSGGEKVPVCLVNDVDNEKGPAYFTYIPTLKNPRPVAPLESSAGCSCIGGCQPGNFNCPCIQKNGGGLKFRLEVFRTNNKGWGLRSWDAIRAGTFICEYAGEVIDNARAEMLGGENDDEYIFDSTRIYQQLEVFPADIEAPKIPSPLYITAKNEGNVARFMNHSCSPNVLWRPIVRENKNESDLHIAFYAIRHIPPMMELTYDYGINLPL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme68340g00001 241 SUPERFAMILY SET domain 14 238 IPR046341 -
Trme68340g00001 241 Pfam Pre-SET motif 33 99 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trme68340g00001 241 ProSiteProfiles SET domain profile. 101 236 IPR001214 GO:0005515
Trme68340g00001 241 SMART set_7 101 240 IPR001214 GO:0005515
Trme68340g00001 241 Gene3D SET domain 6 239 IPR046341 -
Trme68340g00001 241 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 2 236 - -
Trme68340g00001 241 SMART preset_2 28 129 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trme68340g00001 241 Pfam SET domain 112 236 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme68340g00001 Trme-Chr68340 2 834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme68340g00001 2 238 Su(var)3-9 homologs AT1G73100 50.526 3.10e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trme68340g00001 SET 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme68340g00001 K24405 - gmx:100786650 433.721