Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme68331g00001 GTAGCTCGTGCTCTTGAAACATTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAAAGACAACTTAGGATTAGAACTATTTATGAAAGTAAAATGCTTGAATATGATGCTGAAAGACATTTAGTTGTTTTTTGGATTTCGTGTGAGGCGGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAATTCTTGGTGTTGGTGCTCATATGCAAGAGCTTAGGAGGGTTAGGTCAGGGATTATGGGTGAGAAAGATAATATGGTTTCTATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTATCGCGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTAGTTGTTAAGGATTCGGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCGGGGTTGCTTAGGTTTGAGAATGATATTGAAGCTGGTGAGGAGGTTGTGCTTATGACTACTAAGGGTGAAGCTAT 524 0.3798 VARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAERHLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEA 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme68331g00001 174 CDD PUA_Cbf5 127 174 - -
Trme68331g00001 174 ProSiteProfiles PUA domain profile. 128 174 - -
Trme68331g00001 174 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 1 174 IPR004802 GO:0006396
Trme68331g00001 174 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 1 174 IPR004802 GO:0006396
Trme68331g00001 174 Gene3D PUA domain 117 174 IPR036974 GO:0003723
Trme68331g00001 174 Pfam PUA domain 129 174 IPR002478 GO:0003723
Trme68331g00001 174 Gene3D Pseudouridine synthase 1 116 - -
Trme68331g00001 174 SUPERFAMILY Pseudouridine synthase 5 126 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trme68331g00001 174 Pfam tRNA pseudouridylate synthase B C-terminal domain 59 125 IPR032819 -
Trme68331g00001 174 SUPERFAMILY PUA domain-like 128 173 IPR015947 -
Trme68331g00001 174 FunFam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 1 119 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme68331g00001 1 174 NAC Transcription Factor Family AT3G57150 88.506 6.10e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme68331g00001 K11131 - sind:105162527 339.347