Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme68324g00001 CTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAACTAGCAATGGATATGATGGTGGTGTTCTCCGATGACCATGATCGTAATGCCGATAGTGCTATTGTCGAAAGGCTTGCAATAAAGTTGGAGCTTCGCAGTGTTGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGACAACAAGCTGAGAGTACACAGAAAATAATTGGCCTTCTTAACAGATTCAAAAGGGTTGCAGGTATGGAAGAAACCGCTATCGTCCTTGATGGTGATCCTGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTTTGTCCAATTACACTTGAAATCATGACTGATCCTGTTATTGTTGCAAGTGGACAGGTAATCACATAG 447 0.4295 LELMHVQLRRARRRTDTQDIELAMDMMVVFSDDHDRNADSAIVERLAIKLELRSVEDLEVETVAVGNLVRERKGQQAESTQKIIGLLNRFKRVAGMEETAIVLDGDPAMPNKMLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQVIT 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme68324g00001 148 ProSiteProfiles U-box domain profile. 121 148 IPR003613 GO:0004842|GO:0016567
Trme68324g00001 148 Pfam U-box domain 122 147 IPR003613 GO:0004842|GO:0016567
Trme68324g00001 148 PANTHER U BOX DOMAIN-CONTAINING 2 145 - -
Trme68324g00001 148 SUPERFAMILY RING/U-box 121 146 - -
Trme68324g00001 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme68324g00001 Trme-Chr68324 92 538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme68324g00001 7 146 U-box Gene Family AT5G42340 59.286 1.47e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme68324g00001 - - tpra:123891904 278.1