Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme682385g00001 | GATGGACAGGTTATCACAATTGGAGCTGAGAGGTTCCGTTGCCCTGAAGTTCTTTTCCAGCCGTCTATGATTGGAATGGAAGCTGCTGGAATTCATGAGACCACCTACAACTCTATAATGAAGTGTGATGTGGATATCAGAAAGGATCTGTATGGAAACATTGTTCTTAGTGGTGGTTCAACTATGTTCCCTGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCCCTGGCTCCTAGCAGCATGAAGATT | 252 | 0.4524 | DGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKI | 84 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme682385g00001 | 84 | Gene3D | Actin; Chain A, domain 4 | 1 | 28 | - | - | |
| Trme682385g00001 | 84 | SUPERFAMILY | Actin-like ATPase domain | 1 | 83 | IPR043129 | - | |
| Trme682385g00001 | 84 | PANTHER | ACTIN | 1 | 84 | IPR004000 | - | |
| Trme682385g00001 | 84 | Gene3D | - | 29 | 84 | - | - | |
| Trme682385g00001 | 84 | Pfam | Actin | 1 | 84 | IPR004000 | - | |
| Trme682385g00001 | 84 | FunFam | Major actin | 13 | 84 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme682385g00001 | Trme-Chr682385 | 2 | 253 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme682385g00001 | 1 | 84 | Cytoskeleton Gene Families | AT5G09810 | 97.619 | 2.22e-55 | 173 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme682385g00001 | K10355 | - | aew:130767795 | 170.244 |