Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6819g00001 ATGGATGAGCACCAAAACTCACTAGTGTACACCAATAATTTTGAACTTCATGACTTCATCGATGATCCAAACTTTGATCAATTTATCGATTTAATTCGGGGTGAGAATGAAGATGCAATATGTAACTTTGGTTCTGACCTTATCAATGATTGTTTTGTTGATAATAATAATCATCAGCTTCTTTTAAATCCTCCAAACCCATTAATATTTAATCACAATAGCAACAACTATAGCAATATTGTGAATGTGTATGATCCAAGCTCTAGCACAATTGGCTCCTTCTCTTGTTATGATGGGGAGGTTAAGGGAGAAGGAGAAAATGATGGAGACGATTCTTCAGCAACAACAATCACAACGACCGCGATTGATGATGCCAAACCTAGGGCTAAAAATGATAGGTCTAAGACACTCATTTCTGAGAGGAGAAGAAGAGGTCGGATGAAGGATAAGCTTTATGCGTTGCGTTCTTTGGTTCCCAACATTACAAAGATGGATAAAGCCTCTATAATTGGAGATGCAGTATCATATGTACATGACCTTCAAGCACAATCTAGGAAGTTGAAGGCTGAG 570 0.3772 MDEHQNSLVYTNNFELHDFIDDPNFDQFIDLIRGENEDAICNFGSDLINDCFVDNNNHQLLLNPPNPLIFNHNSNNYSNIVNVYDPSSSTIGSFSCYDGEVKGEGENDGDDSSATTITTTAIDDAKPRAKNDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQSRKLKAE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6819g00001 190 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 190 - -
Trme6819g00001 190 Gene3D - 123 190 IPR036638 GO:0046983
Trme6819g00001 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Trme6819g00001 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 189 IPR036638 GO:0046983
Trme6819g00001 190 Pfam Helix-loop-helix DNA-binding domain 138 181 IPR011598 GO:0046983
Trme6819g00001 190 SMART finulus 137 186 IPR011598 GO:0046983
Trme6819g00001 190 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 127 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6819g00001 Trme-Chr6819 31 1074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6819g00001 1 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.268 8.60e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme6819g00001 HLH 7.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6819g00001 K26214 - gmx:100805451 236.113