Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6817g00001 ATGCTTGACGAAGCTATACACGCTGACCTCACCATTATAACAGCAGACGGTACACTCAAGGCACATAAAGCAGTCTTGTCTGCAACTTCTCCTGCATTCCAGGCCTCATATCATGACAGCAGCGAAGTGAAAGAGTCGTCTACAATCCACATAGAAGAGATGTCACAAGAATCCTGCACGGCCCTTCTAAGTTACATGTACGGCACAATAAAACCCGGAGATTTCTGGAAACACAGGCTTGCATTGCTTGGAGCAGCCAATAAATACGACATCGGCGATCTCAAAGATGCGTGTGAGGAAAGCCTACTCGAAGATCTTAACTCAGGAAATGTTCTCGAGAGGCTGAATGAGGCTTGGTTGTACCAACTGCAAAAGTTAAAGAAAGGATGTTTCACATTCTTATTTGATTTTGGTAAGATATATGATGTTAGAGAAGAAATAAATACATTTTTTCGTCATGCAGATAGGGATCTAATGCTGGAGATGTTTCAAGAAGTGCTTACAATTTGGAAATAG 516 0.4186 MLDEAIHADLTIITADGTLKAHKAVLSATSPAFQASYHDSSEVKESSTIHIEEMSQESCTALLSYMYGTIKPGDFWKHRLALLGAANKYDIGDLKDACEESLLEDLNSGNVLERLNEAWLYQLQKLKKGCFTFLFDFGKIYDVREEINTFFRHADRDLMLEMFQEVLTIWK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6817g00001 171 ProSiteProfiles BTB domain profile. 8 67 IPR000210 GO:0005515
Trme6817g00001 171 Pfam BTB/POZ domain 5 104 IPR000210 GO:0005515
Trme6817g00001 171 PANTHER OS08G0495500 PROTEIN-RELATED 1 171 IPR044714 -
Trme6817g00001 171 SUPERFAMILY POZ domain 2 104 IPR011333 -
Trme6817g00001 171 Gene3D Potassium Channel Kv1.1; Chain A 1 135 IPR011333 -
Trme6817g00001 171 SMART BTB_4 8 106 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6817g00001 Trme-Chr6817 1206 1721 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trme6817g00001 BTB 1.4e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6817g00001 K10523 - rcu:8278000 288.115