Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme68135g00001 GAAGAGGAAGAGGAGGAGGAAGAGGTCGAAGAAGTGGAAGAAGATGATGCCACGGAAAACCACAGCATTGATGATGATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCACAAGTCTGAAGTTTACATAGGTGGCATTCCTCTTGATGCGTTAACTGAAGATTTAAAAGAATTTTGTGAGCGTATTGGGGAAGTTGTACAGGTTAGAATAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGATTTGCTTTTGTGACTTATAGAAATGTAGAACTGGCTACTAAAGCCATCGAGGAGCTGAAYAATACCATATTTAAGGGTAGAAAAATAAAATGTTCTACATCTCAAGCCAAAAATCGTCTTTTTATTGGCAATATTCCTAGAAGCTGGGGCGAAAAAGACCTGAAGAAGGTTGTGACTGCAATTGGACCTGGAGTTACCGCTGTTGAACTAGTCAAGGTATGCATTAAGCTGTTCTGCATTCCTTTTCCATTTTTAATGACGTTTCTAGTGTTTATTTGTTATGGTCATGCCTGA 546 0.3883 EEEEEEEEVEEVEEDDATENHSIDDDEKKKHAELLSLPPHKSEVYIGGIPLDALTEDLKEFCERIGEVVQVRIMKGKDSSENKGFAFVTYRNVELATKAIEELNNTIFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTAIGPGVTAVELVKVCIKLFCIPFPFLMTFLVFICYGHA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme68135g00001 181 MobiDBLite consensus disorder prediction 1 21 - -
Trme68135g00001 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Trme68135g00001 181 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 4 145 - -
Trme68135g00001 181 SMART rrm2_1 43 116 IPR003954 GO:0003676
Trme68135g00001 181 SMART rrm1_1 43 116 IPR000504 GO:0003723
Trme68135g00001 181 Gene3D - 1 123 IPR012677 -
Trme68135g00001 181 CDD RRM_SF 44 116 - -
Trme68135g00001 181 MobiDBLite consensus disorder prediction 1 28 - -
Trme68135g00001 181 SUPERFAMILY RNA-binding domain, RBD 41 152 IPR035979 GO:0003676
Trme68135g00001 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme68135g00001 Trme-Chr68135 1 806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme68135g00001 42 147 Eukaryotic Initiation Factors Gene Family AT1G49760 26.316 5.44e-08 50.1