Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6807g00001 GCTGGTGATAGAGGTACAAAACTTTCAGGAGGTCAAAAGCAAAGAATTGCATTGGCTAGAGCAATGATAAAAAATCCTAAAATCCTTATTTTAGATGAACCAACTAGTGCTCTTGATGCCGAGTCAGAGTCGGCAGTCCAAAGGGCCATTGACAAGATTTCTGCAGGCAGGACAACCATTGTCATTGCTCACAGGATAGCAACAGTGAAGAATGCTGATGCCATTGTAGTACTTGAACACGGTTCTGTCGCCGAGATTGGTGACCATCGTCAGCTTATGGCGAAAACCGGAGCTTACTACAACCTTGTCAAGCTTGCAACTGAATCCATTTCAAAGCCTCTTCCATTAGAAACCGGCATGCAAAAAACCAATGATTTGTCGTCCATTAATAATAAATATNCTCCTGATATAGCAAAATCAAGTTATCTAGTCGATATCGATTCAATGCAGGATGAGGAACAAGAAGATATTGAAGATAAAAAATATAAAAAGCCAAGAAATTATAAAATTTCTGAGGTATGGAAATTGCAAAAGCCGGAGTTTATGATGCTAATTTCAGGCCTTGTTTTGGGCATGTTTGCTGGTGCTGTTCTGTCCCTTTTTCCATTAGTTTTAGGAATATCCCTTGGAGTATATTTTGGCAATGACACTTCAAAAATGAAAAGAGATGTAGGCTACCTTTGTTTAGTACTTGTCGGCCTTGGATTCGGTTGCATCGTTTCTATGACAGGACAACAAGGTTTATGTGGTTGGGCAGGTTCAAAGCTAACACTTAGGGTTAGAAACCTCTTGTTTCAATCCATATTGAGACAAGAACCTGGATGGTTTGATTTTGATGAAAACTCCACCGGTGTATTGGTGTCACTGCTCTCGAGAGATTCAGTTAGTTTTCGTTCGGTACTCGGCGACAGATTCTCAGTACTTCTTATGGGATTGAGTTCGGCCGCTGTTGGACTCGGCGTGTCCTTTGCCTTTAATGTGAAACTAACCCTTGTTGCAGCTGCTGTAACACCTTTAACCCTTGGTGCAAGTTACATAAACTTGATCATAAACATTGGTCCGAAAATCAATAACGATTCTTATGCAAGAGCTAGCAATATTGCTTCTGGTGCAGTTTCAAATATAAGGACAGTTGCTACATTTTCTGCTCAGGATCAGATAGTTAAATCCTTTGATAATGCCTTATCAGAACCTAGAAAAAAATCATTAAAAAGTTCACAGCTTCAAGGTCTTGTATTTGGAYTRTTCCAAGGTGCTATGTATGCAGCATACACCTTAACTCTTTGGTWTGGTGCATACCTTGTAAAAMAKAACCAAGGMGAATTTGAAGATGTTTATAAGATTTTTCTCATTCTTGTTTTGAGTTCATTTTCTGTTGGTCAACTAGCTGGTTTAGCACCTGATACTTCTATGGCTTCAACATCAATTCCTGCAGTTCAAGATGTTATAAACAGAAAGCCATTGATAGGAAATGATGGAAGAAAAACTAGGAAAGTTGATAGATCAAAGGCTTTTAAAATAGAATTCAAAATGGTGACATTTGCATATCCATCAAGGCCTGAGATAACTGTGTTGAGGAATTTCTGTTTGAAGGTTAAAGGTGGAAGTACAGTGGCTTTGGTGGGACCAAGTGGATCAGGAAAATCAACAATTGTGTGGTTGACACAGAGATTCTATGATCCTGATCAAGGAAATGTTATGATGAGTGGTGTGGATTTGAGGGAGATTGATGTGAAATGGTTGAGGAGACAAATTGGTTTGGTTGGTCAAGAACC 1775 0.3904 AGDRGTKLSGGQKQRIALARAMIKNPKILILDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNADAIVVLEHGSVAEIGDHRQLMAKTGAYYNLVKLATESISKPLPLETGMQKTNDLSSINNKYXPDIAKSSYLVDIDSMQDEEQEDIEDKKYKKPRNYKISEVWKLQKPEFMMLISGLVLGMFAGAVLSLFPLVLGISLGVYFGNDTSKMKRDVGYLCLVLVGLGFGCIVSMTGQQGLCGWAGSKLTLRVRNLLFQSILRQEPGWFDFDENSTGVLVSLLSRDSVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNVKLTLVAAAVTPLTLGASYINLIINIGPKINNDSYARASNIASGAVSNIRTVATFSAQDQIVKSFDNALSEPRKKSLKSSQLQGLVFGLFQGAMYAAYTLTLWXGAYLVKXNQGEFEDVYKIFLILVLSSFSVGQLAGLAPDTSMASTSIPAVQDVINRKPLIGNDGRKTRKVDRSKAFKIEFKMVTFAYPSRPEITVLRNFCLKVKGGSTVALVGPSGSGKSTIVWLTQRFYDPDQGNVMMSGVDLREIDVKWLRRQIGLVGQEP 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6807g00001 592 SUPERFAMILY ABC transporter transmembrane region 173 487 IPR036640 GO:0005524|GO:0016020
Trme6807g00001 592 CDD ABC_6TM_Pgp_ABCB1_D2_like 174 489 - -
Trme6807g00001 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 105 IPR027417 -
Trme6807g00001 592 Gene3D ABC transporter type 1, transmembrane domain 145 493 IPR036640 GO:0005524|GO:0016020
Trme6807g00001 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 592 IPR027417 -
Trme6807g00001 592 Pfam ABC transporter 525 591 IPR003439 GO:0005524
Trme6807g00001 592 Gene3D - 1 112 IPR027417 -
Trme6807g00001 592 Gene3D - 500 592 IPR027417 -
Trme6807g00001 592 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 358 498 - -
Trme6807g00001 592 Pfam ABC transporter 4 36 IPR003439 GO:0005524
Trme6807g00001 592 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 150 592 IPR039421 -
Trme6807g00001 592 Pfam ABC transporter transmembrane region 185 455 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme6807g00001 592 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 187 471 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6807g00001 Trme-Chr6807 173 1947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6807g00001 2 592 Calmodulin-binding Proteins AT2G36910 35.784 3.20e-115 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6807g00001 K05658 - gmx:100816700 921.383