Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme68003g00001 ATGCCTGCCAACAACAACAAAGACAAAAGTATAAGGAGGATGGATTCATTTTTTCGTGTCGTGCCTTCTACTCCTCGAGTAAAGGAAATAAATGAATTGTTAAGCACGTCCCCGACAAAGGATACAGAAGACGAAGATGCTGACGGCGGCGAAGATATAGCTGAAGAAGAGGCGGTGTGTAGAATCTGTTTGGTTGAATTATGTGAAGGAGGTGAGACATTCAAATTGGAATGTAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACATGTGATGTCTGCAAAAAGGAAGTTACAAATCTTCCTGTCACT 351 0.4103 MPANNNKDKSIRRMDSFFRVVPSTPRVKEINELLSTSPTKDTEDEDADGGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKKEVTNLPVT 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme68003g00001 117 Pfam RING-variant domain 60 107 IPR011016 GO:0008270
Trme68003g00001 117 ProSiteProfiles Zinc finger RING-CH-type profile. 52 114 IPR011016 GO:0008270
Trme68003g00001 117 CDD RING_CH-C4HC3_MARCH 60 108 - -
Trme68003g00001 117 PANTHER OS02G0165000 PROTEIN 2 117 - -
Trme68003g00001 117 SUPERFAMILY RING/U-box 56 111 - -
Trme68003g00001 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 114 IPR013083 -
Trme68003g00001 117 SMART ringv_2 59 108 IPR011016 GO:0008270
Trme68003g00001 117 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme68003g00001 Trme-Chr68003 1 461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme68003g00001 43 114 C3H Transcription Factor Family AT2G37950 43.836 2.89e-13 61.6