Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6799g00001 AACAGGCCTGAACCTTATGGAGCAGGAGTTGGTGGTATTCCAAAGGAAATCCCAGAAACCGCAGATATAAAGTTGCCTTGCAATACAACTCGGTGCCAAAATTCGTCGAAATCGAAAAAAACAGCGTCTATTACTGTCGGCATAGTTCTGGCGACAATTGCATTGTCAGCAATAGGCATTCTAAGCATCACAATGTATCGTCGGCGAAAGCAAAAGCTTGGTAGTGCGTTTGATATCACCGAAAGCCGTCTAAGTACCGATCAAACAAAAGGCATATACAGGAAAAACGGATCTCCTTTGGTTAGCCTTGAGTATGCAAATGGATGGGATCCTTTGGCCGACAGTAGAAATTTCAATGGAGATAGGCAAGATATGTTTCAAAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCGACTCAGTATTTCTCGGAGTTGAATTTGTTGGGTAAGAGTAACTTTAGTGCAACGTATAAAGGAGTTTTAAGAGATGGATCTATTGTTGCTATTAAGAGCATAAGTAAAACTAGTTGCAAATCAGATGAAGCTGAGTTTCTTAAAGGATTGAACATTTTGACATCATTGAGGAATGATAATTTGGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGTGAATGCTTCTTGGTTTATGATTTTGTTTCAAATGGAAATTTGTCACAATATCTCGATGTGAAGGAAGGTGATGGCGAAGTCCTTGAGTGGTCAACTAGGGTTTCTATTGTAAAAGGAATTGCTAAAGGCTTAGCTTATTTGCATAAATACAAACCAAACAAACCAGCTCTGGTTCACCAAAACATCTCAGCTGATAAAGTACTCATCGATCAGCGACAGAATCCGGTGCTCTCAGATTCTGGCCTATATAAGCTCCTCACAAATGATATTGTCTTCTCTTCACTAAAGGGTAGTGCCGCAAAGGGGTACCTAGCTCCAGAATACACTACCACAGGCCGGTTCACAGAAAAAAGCGACGTTTATGCTTTCGGGATCCTTCTTTTCCAGATACTCACTGGTAAGCAAAAGATCACTAGCTCAATTCGCCTTGCCGCAGAATCCTTCAAATTCCAAGAATTCATTGACCAGAATCTCCATGGAAGATTCTTCGAGTATGAGGCAGCTAAACTAGCAAGAATGGCAATACTTTGTTCACATGACATTCCCTTTGAGAGGCCAACCATGGAAGCTATTGTTCAAGAACTTGGCAATTGTAGTAGTTGTCTTTGA 1248 0.4111 NRPEPYGAGVGGIPKEIPETADIKLPCNTTRCQNSSKSKKTASITVGIVLATIALSAIGILSITMYRRRKQKLGSAFDITESRLSTDQTKGIYRKNGSPLVSLEYANGWDPLADSRNFNGDRQDMFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSIVAIKSISKTSCKSDEAEFLKGLNILTSLRNDNLVRLRGFCCSRGRGECFLVYDFVSNGNLSQYLDVKEGDGEVLEWSTRVSIVKGIAKGLAYLHKYKPNKPALVHQNISADKVLIDQRQNPVLSDSGLYKLLTNDIVFSSLKGSAAKGYLAPEYTTTGRFTEKSDVYAFGILLFQILTGKQKITSSIRLAAESFKFQEFIDQNLHGRFFEYEAAKLARMAILCSHDIPFERPTMEAIVQELGNCSSCL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6799g00001 415 SUPERFAMILY Protein kinase-like (PK-like) 121 408 IPR011009 -
Trme6799g00001 415 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 42 409 - -
Trme6799g00001 415 Gene3D Phosphorylase Kinase; domain 1 114 221 - -
Trme6799g00001 415 Pfam Protein tyrosine and serine/threonine kinase 147 408 IPR001245 GO:0004672|GO:0006468
Trme6799g00001 415 FunFam Protein NSP-INTERACTING KINASE 2 222 412 - -
Trme6799g00001 415 Gene3D Transferase(Phosphotransferase) domain 1 222 414 - -
Trme6799g00001 415 ProSiteProfiles Protein kinase domain profile. 143 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6799g00001 415 FunFam Protein NSP-INTERACTING KINASE 2 114 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6799g00001 Trme-Chr6799 1 1466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6799g00001 17 256 Miscellaneous Gene Families AT4G22730 53.659 1.44e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trme6799g00001 PK_Tyr_Ser-Thr 2.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6799g00001 - - gmx:100789253 743.036