Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme679043g00001 ATGCCATCTCCTGGGGCTGAAGGAGCACAAGCAGTAGCAATGAGGATATCAGGAGATCAAGCTGAATTTAGGGGTTGTGGATTTTTTGGAGCACAAGATACCCTTCATGATGATAAGGGTCGTCATTACTTTAAAGATTGCTATATTCAAGGATCCATTGATTTCATATTTGGCAATGCAAGGTCACTTTATGAG 195 0.4103 MPSPGAEGAQAVAMRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYE 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme679043g00001 65 ProSitePatterns Pectinesterase signature 2. 49 58 IPR033131 -
Trme679043g00001 65 Gene3D - 1 65 IPR012334 -
Trme679043g00001 65 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 65 - -
Trme679043g00001 65 Pfam Pectinesterase 5 63 IPR000070 GO:0030599|GO:0042545
Trme679043g00001 65 SUPERFAMILY Pectin lyase-like 5 65 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme679043g00001 Trme-Chr679043 54 248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme679043g00001 1 65 Carbohydrate Esterase AT1G05310 80.000 2.71e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme679043g00001 - - gmx:100806629 132.494