Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme67897g00001 GTTGCTGGGGATGGATTCATGGCAAAGGRTCTGACAATTGAAAACACAGCAGGTGCTAATGCACACCAAGCAGTAGCATTCAGATCAGACAGTGATCTTTCTGTTATTGAGAATTGTGAATTCGTAGGCAACCAAGATACTCTATATGCTCAATCCATGCGTCAGTTTTATAAATCTTGCCGTATTATAGGCAATGTGGATTTCATCTTTGGAAACTCGGCTTCGTTCTTCCAAGACTGCAAAATCCTTGTCCAGCCCAGGCAAGCAAGGCCAAAGAAAGGGGAGAACAATGCCATTACTGCACACGGCAGAACAGATCCAGCTCAGTCTACTGGTTTTGTTTTCCACAACTGCTTGGTTAATGGTACTGAGAAATATATGGAATTGTATTATGACAAGCCTAATGTACACAAGAACTATCTCGGAAGGCCATGGAAGGAGTATTCTAGAACAGTTTTCATTAATTCGTACTTGGAAGCCTTAATCACGCCACAGGGTTGGTTGCCATGGAGTGGAGATGTTGGACTGAATACACTCTACTACGGGGAATTCGACAACTCTGGACCTGGTTCTAATTTGACCAACAGA 588 0.4303 VAGDGFMAKXLTIENTAGANAHQAVAFRSDSDLSVIENCEFVGNQDTLYAQSMRQFYKSCRIIGNVDFIFGNSASFFQDCKILVQPRQARPKKGENNAITAHGRTDPAQSTGFVFHNCLVNGTEKYMELYYDKPNVHKNYLGRPWKEYSRTVFINSYLEALITPQGWLPWSGDVGLNTLYYGEFDNSGPGSNLTNR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme67897g00001 196 Pfam Pectinesterase 1 196 IPR000070 GO:0030599|GO:0042545
Trme67897g00001 196 PANTHER PECTINESTERASE 1 196 - -
Trme67897g00001 196 Gene3D - 1 196 IPR012334 -
Trme67897g00001 196 SUPERFAMILY Pectin lyase-like 1 196 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme67897g00001 Trme-Chr67897 249 836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme67897g00001 1 196 Carbohydrate Esterase AT5G09760 72.959 3.24e-107 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme67897g00001 - - gmx:100802102 365.155