Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme67762g00001 ATTTTTGTTGGCAATTTGGATCCTAATGTCACGGATGATCATTTGAAACAAGTTTTTGGGCAGTATGGAGAACTGGTTCATGTTAAGATTCCATCAGGCAAGAGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTCTGCAGAGGAGGCACTGCGTGTTTTAAATGGTACACTTCTGGGTGGACAAAATGTTAGGCTTTCATGGGGCCGAAGCCCAGCAAACAAACAGACTCAACAGGATCCAAACCAGTGGAATGGTAGCAGTGGATACTATGGATATCCCCAGGGTTATGAAAATTATGCCTATGCCCCTGCAGCTGGACAGGACCCCAATATGTATGGCAGTTATCCAGCGGGGTATGCAAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATACAGTTGA 408 0.4534 IFVGNLDPNVTDDHLKQVFGQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSGYYGYPQGYENYAYAPAAGQDPNMYGSYPAGYANYQPPQQQQQIGYS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme67762g00001 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 64 IPR000504 GO:0003723
Trme67762g00001 135 SUPERFAMILY RNA-binding domain, RBD 1 96 IPR035979 GO:0003676
Trme67762g00001 135 MobiDBLite consensus disorder prediction 114 135 - -
Trme67762g00001 135 SMART rrm1_1 1 67 IPR000504 GO:0003723
Trme67762g00001 135 MobiDBLite consensus disorder prediction 121 135 - -
Trme67762g00001 135 Gene3D - 1 104 IPR012677 -
Trme67762g00001 135 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 130 - -
Trme67762g00001 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 71 IPR000504 GO:0003723
Trme67762g00001 135 FunFam polyadenylate-binding protein RBP45 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme67762g00001 Trme-Chr67762 144 740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme67762g00001 1 78 Eukaryotic Initiation Factors Gene Family AT2G23350 31.325 7.45e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme67762g00001 - - gmx:100801562 218.779