Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme67682g00001 ATGAAAGCTAAAAGAAAAGGTGGCAATCTATCTCTAACTGAGATGAATAAGGAGTCAAAGACAAAAATGAGAGATTTGAACAGAGGTGTGGATCCTCAGCTATGGCATGCCATTGCTGGAGGAATGGTGCAAATGCCAGAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCACGCCGAGCATGCATGTGAACTAGTGAATTTTAGTGCTCACTCGATAATTCCGCACAAAATTCCATCTTTAATTCCATGTAGAGTTGAATCTATCAAATATATGGCTGATCCTGAGACCGATGAGGTGTTTGCAAAACTCCGGCTTGTTCCTTTGCATATTAGCCAGGTTCGTTTTGACGATGATGATGGTGTTGGTGGCATCGGTGTGTCTGAAACTAAGGATAAACATCAATGTTTTGCGAAAACCTTGACACAATCTGATTCAAACAATGGTGGTGGGTTTTCTTGTCCTAGATACTGTGCTGAAACACTTTTTCCTAGTTTGGACTATTCAGGTAACCCTCCTTCTCAGGACATTTATCCTAAAGACGTTCATGGCGAAACGTGGCCTTTCAAACACGTTTATAGGGGCACGCCGAAGCGGCATCTGTTGACAACTGGATGGAGCCCTTTTGTTAGTGACAAGAAAATTGTTTCCGGGGATTCAATTGTGTTTGTGAGAACAGAAAACGGTGATCTTCATGTCGGACTTCGGAGGGCTAAAAGGAAAAGGGATGTTAGACCTGATCCTTCGTCAGAGATGAAACCTGGCAGTGGAATTGGAATTCGTCCTGATTTACCTTACG 802 0.4277 MKAKRKGGNLSLTEMNKESKTKMRDLNRGVDPQLWHAIAGGMVQMPEVNSKIFYFPQGHAEHACELVNFSAHSIIPHKIPSLIPCRVESIKYMADPETDEVFAKLRLVPLHISQVRFDDDDGVGGIGVSETKDKHQCFAKTLTQSDSNNGGGFSCPRYCAETLFPSLDYSGNPPSQDIYPKDVHGETWPFKHVYRGTPKRHLLTTGWSPFVSDKKIVSGDSIVFVRTENGDLHVGLRRAKRKRDVRPDPSSEMKPGSGIGIRPDLPY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme67682g00001 267 SMART B3_2 138 240 IPR003340 GO:0003677
Trme67682g00001 267 CDD B3_DNA 137 238 IPR003340 GO:0003677
Trme67682g00001 267 MobiDBLite consensus disorder prediction 1 22 - -
Trme67682g00001 267 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 247 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme67682g00001 267 Gene3D - 136 240 IPR015300 -
Trme67682g00001 267 ProSiteProfiles B3 DNA-binding domain profile. 138 240 IPR003340 GO:0003677
Trme67682g00001 267 MobiDBLite consensus disorder prediction 237 267 - -
Trme67682g00001 267 Pfam B3 DNA binding domain 138 239 IPR003340 GO:0003677
Trme67682g00001 267 SUPERFAMILY DNA-binding pseudobarrel domain 133 241 IPR015300 -
Trme67682g00001 267 FunFam Auxin response factor 136 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme67682g00001 Trme-Chr67682 37 838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme67682g00001 28 241 B3 DNA Binding Superfamily AT4G30080 63.721 2.06e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme67682g00001 B3 3.6e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme67682g00001 - - psat:127130059 372.859