Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6763g00001 GAAAAGCATACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGAACTTTATGTAATGCATGTGGCCTCATGTGGGCCAACAAGGGGACACTCAGAGATCTCAGGAAGGGGGGAAGAAATCTTTCTGTTGAGCAAAGTGGTCTGGACCCTTCTATTGATGTCAAGCCTACTGTTCTTGAAGGGGAATTGTCTGTCATCGAAAATGAACAAGGTATTTCGGAAAATCCTTCCAAGGCCATTGCTGCTGAAGGTTCAAATAATCATGCATTAAATCCAAGTGATGAGGAATTGCCTGAATCTGCAGAACACCTTACAAACACACTGCCATTGGTAATTGACCATTCTTCGGAAAATGATGAACAG 363 0.4463 EKHTPAMRRGPAGPRTLCNACGLMWANKGTLRDLRKGGRNLSVEQSGLDPSIDVKPTVLEGELSVIENEQGISENPSKAIAAEGSNNHALNPSDEELPESAEHLTNTLPLVIDHSSENDEQ 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6763g00001 121 Pfam GATA zinc finger 3 30 IPR000679 GO:0006355|GO:0043565
Trme6763g00001 121 CDD ZnF_GATA 4 37 IPR000679 GO:0006355|GO:0043565
Trme6763g00001 121 MobiDBLite consensus disorder prediction 84 121 - -
Trme6763g00001 121 Gene3D - 1 45 IPR013088 GO:0006355|GO:0008270
Trme6763g00001 121 PANTHER GATA TRANSCRIPTION FACTOR 28 1 119 IPR045280 GO:0006355
Trme6763g00001 121 SMART GATA_3 1 41 IPR000679 GO:0006355|GO:0043565
Trme6763g00001 121 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6763g00001 Trme-Chr6763 53 1912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6763g00001 1 36 Tify Gene Family AT1G51600 86.111 1.94e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme6763g00001 GATA 1.3e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6763g00001 - - gmx:100801328 192.586