Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme675g00002 ATGAATAGATATGAATACAAGTTTATTGGGAAGATAGTCAAATACATCTCCAACAAGATAAATCGTTCCTCTTTACATGTTGCTAATTACCCCGTTGGAATACAGTCTCGAGTACAAAATGTGAAATTGCTTCTTGATAATGGATCGGATGATGGAGTCCATATGGAGGAGCTCCTTTTAAAAATAATTGGATTGAACATTAAGTTAGGAGATGTTAGTGAGGGAATTCCAATCATAAAGGAAAGGCTATGTAGAAAGCAGATTCTTTTGATTCTCGATGATGTTGACGATATTAAGCAACTGCAGGTTTTGGCTGGAGGACTTGATTGGTTCGGTCCTGGCACCAGAGTTATTATTACCACTCGAGACAAACACTTATTAATAAGTCATGAGATAGAAAGAATTTATGCAGCAGAAGGGATGTATGGGATAGAAGCTCTTGAATTGTTGAGGTGGATGGCTTTTAAAAATAACGAAGTTCCTTCCGGTTATGAAGACATTTTAAATCGTGCAGTTGCTTATGCGTCTGGTCTTCCTCTAGTTATAGAAATTGTGGGTTCCAACTTGTTTGGAAAGAGCATAGAAGAATGGAAGTATACATTAGATGGATATGAAAGGATTCCCCATAAAAAGATCCAAGAGATACTTAAAGTAAGTTATGATGCATTGGAGGAAGAGGAGCAGAGTGTCTTTCTCGACATTGCTTGTTGCTTCAAAGGGTGTAGATGGGCGGAAGTCGAAGATATACTTCATGCTCATTATGGCCATTGCATAAAACATCATCTTGGAGTGTTGGCTGAAAAGTCTCTCATAAAGTTTAGTACTTGGAGAACTTATGTTGATGTGACATTACATGACTTGATAGAGGGCATGGCTAAAGAAGTTGTCCGACAACAATCACCTAAAGAGCCTGGAGAACGTAGTAGATTGTGGTATTGTGATGATATAATTCATGTTTTAAAAGAAAATACGGTTGTACAAGTCTCGAGAAGTTTCCAGAAATATTGGACAAGATGGAAAATATCAGATAGCATTCAATTGGATGGTTGCAAATATCTTGAGGAAATCAGAGGTATTCCGCCAAATCTAACAGAATTGTCTGCATTAGGTTGCAAATCATTGACTTCATCTAGTAAAAGCATGCTAGTGAAACAGGACAACTTCAGTTGTATTGTGTTTGATTTTAAAACTGTTCCTAGTGCTAGACAAACTGAGGGCCAAGAGACAGAACAAAAACTGAAATTCTTGTCCCCCACTGAACCACCAGACAACTTTTTGTCCTCAGCAAAAGTTGTCTAA 1299 0.3764 MNRYEYKFIGKIVKYISNKINRSSLHVANYPVGIQSRVQNVKLLLDNGSDDGVHMEELLLKIIGLNIKLGDVSEGIPIIKERLCRKQILLILDDVDDIKQLQVLAGGLDWFGPGTRVIITTRDKHLLISHEIERIYAAEGMYGIEALELLRWMAFKNNEVPSGYEDILNRAVAYASGLPLVIEIVGSNLFGKSIEEWKYTLDGYERIPHKKIQEILKVSYDALEEEEQSVFLDIACCFKGCRWAEVEDILHAHYGHCIKHHLGVLAEKSLIKFSTWRTYVDVTLHDLIEGMAKEVVRQQSPKEPGERSRLWYCDDIIHVLKENTVVQVSRSFQKYWTRWKISDSIQLDGCKYLEEIRGIPPNLTELSALGCKSLTSSSKSMLVKQDNFSCIVFDFKTVPSARQTEGQETEQKLKFLSPTEPPDNFLSSAKVV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme675g00002 432 PRINTS Disease resistance protein signature 175 189 - -
Trme675g00002 432 PRINTS Disease resistance protein signature 82 96 - -
Trme675g00002 432 SUPERFAMILY "Winged helix" DNA-binding domain 210 321 IPR036390 -
Trme675g00002 432 Gene3D - 25 135 IPR027417 -
Trme675g00002 432 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 56 377 IPR044974 GO:0006952
Trme675g00002 432 Gene3D - 143 224 IPR042197 -
Trme675g00002 432 Pfam NB-ARC domain 79 222 IPR002182 GO:0043531
Trme675g00002 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme675g00002 Trme-Chr675 1164 3772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme675g00002 76 322 WRKY Transcription Factor Family AT5G45050 30.400 2.63e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme675g00002 - - vvo:131594476 479.174