Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6758g00001 GTAATTATAGGTTCTGAAGATTTAAAGGCTAACCATGCTATAAAGCAATATGTTGACATTGTTCCTGAAAAGCAAAAATATGATAAATTGGTGAAGTTGTTGGAAGACATCATGGATGGAAGCCGAATATTGATATTCATGGATACTAAAAAAGGATGTGATCAGATTACTAGACAGCTCCGCATGGATGGTTGGCCTGCCCTTTCAATTCATGGAGACAAAAGTCAAGCAGAGAGAGATTGGGTGCTTTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACCGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAAGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTAGAGGATTATGTTCACCGCATTGGAAGAACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCAGCTAATGCCAGATTTGCAAAGGAACTTATTAGCATACTCGAGGAAGCTGGACAGAGRGTGAGTCCTGATTTGGCAGCAATGGGGCGTGGTGCACCTCCTCCKCCTTCAGGAGGCTTCCGAGACCGGGGGAAGAGTTTTGGCAGTGGTCGCCCATGGAGCTGA 600 0.4383 VIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSPDLAAMGRGAPPPPSGGFRDRGKSFGSGRPWS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6758g00001 199 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 29 174 IPR001650 -
Trme6758g00001 199 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 4 173 - -
Trme6758g00001 199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 170 IPR027417 -
Trme6758g00001 199 Gene3D - 4 175 IPR027417 -
Trme6758g00001 199 SMART helicmild6 54 135 IPR001650 -
Trme6758g00001 199 Pfam Helicase conserved C-terminal domain 26 135 IPR001650 -
Trme6758g00001 199 MobiDBLite consensus disorder prediction 169 199 - -
Trme6758g00001 199 CDD SF2_C_DEAD 14 144 - -
Trme6758g00001 199 FunFam ATP-dependent RNA helicase RhlB 4 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6758g00001 Trme-Chr6758 112 1939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6758g00001 14 155 Eukaryotic Initiation Factors Gene Family AT3G19760 40.559 1.10e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6758g00001 K12823 - gmx:100790464 370.548