Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme674013g00001 AAATGTCACTTTGTTGGAATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCATCTTCTCACAATTGTGATGTGCCTCATGTGAATCGTACCGACTACCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTTTAACTTTATGTTAA 156 0.3654 KCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLTLC 51
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme674013g00001 51 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 48 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Trme674013g00001 51 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 29 48 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trme674013g00001 51 Gene3D - 1 29 IPR014722 -
Trme674013g00001 51 SUPERFAMILY Translation proteins SH3-like domain 3 37 IPR008991 -
Trme674013g00001 51 Gene3D - 30 50 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme674013g00001 Trme-Chr674013 3 251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme674013g00001 1 48 Eukaryotic Initiation Factors Gene Family AT1G13950 93.750 4.04e-29 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme674013g00001 K03263 K02180 tcc:18610325 103.99