Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme673348g00001 ATGGTCAGAGGGACAAGAGGGTACATGGCCCCGGAATGGAACAAGAATGTGCCAATATCAGTGAAAGCAGATGTTTATAGCTATGGAATAGTGTTGTTGGAAATCTTATGTTGCAGAAGAAACCTAGGTGTTAATGTGTTGGAACCTGGGGAGATTCTTCTCTCTGGTTGGGCTTATAAGTGCTTTGTTGCAGGAGAG 198 0.4394 MVRGTRGYMAPEWNKNVPISVKADVYSYGIVLLEILCCRRNLGVNVLEPGEILLSGWAYKCFVAGE 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme673348g00001 66 ProSiteProfiles Protein kinase domain profile. 1 66 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme673348g00001 66 Gene3D Transferase(Phosphotransferase) domain 1 1 62 - -
Trme673348g00001 66 SUPERFAMILY Protein kinase-like (PK-like) 2 40 IPR011009 -
Trme673348g00001 66 Pfam Protein kinase domain 2 39 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme673348g00001 66 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme673348g00001 Trme-Chr673348 15 212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme673348g00001 2 66 Receptor kinase-like Gene Family AT4G04510 52.308 4.12e-14 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme673348g00001 Pkinase 3.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme673348g00001 - - adu:107470047 124.79