Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme67330g00001 ATGGTGGCTTTTGGAGTTGCAGTGCTGATATTGTTGACTTACTGCATAAGGACAAAGATCTTCCCCCCAACGTTTCTTCTGTTCCGGAAGGAGAGTTCAACTCATCATATTATTGAGGAGTATTTGAAAGAACATGGACCTCTTCCTGCTSCTGCAAGGTACAGTTATTCAGATATCAAGAAAATAACAAACTCTTTCAAAAACAAATTAGGACAAGGAGGGTATGGAAGTGTATACAAAGGGAAGTTACATGATGAATGTACTGTCGCAGTGAAGGTTTTAAGTGAATCTAAAGGTGACGGTGAAGATTTCATTAATGAAGTTGCGAGTATCAGCAGAACTTCACATGTTAACGTTGTTAGACTTTTAGGGTTCTGTTTGGATGGTTCTAAAAAGGCACTCATATACGAATTTATGCCTAATGGATCTCTTGAAAAGTTTATATACGAAGAGAAAAATCCATTAAAGGATGATCGCCAATTGGATTGCAAAACATTGTATGATATTGCGGTTGGCGTTGCTCGTGGATTAGAGTACTTGCACAGAGGCTGCAACACTAGAATCTTACATTTTGACATAAAACCTCATAATATA 594 0.3754 MVAFGVAVLILLTYCIRTKIFPPTFLLFRKESSTHHIIEEYLKEHGPLPAXARYSYSDIKKITNSFKNKLGQGGYGSVYKGKLHDECTVAVKVLSESKGDGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEEKNPLKDDRQLDCKTLYDIAVGVARGLEYLHRGCNTRILHFDIKPHNI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme67330g00001 198 ProSiteProfiles Protein kinase domain profile. 64 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme67330g00001 198 Gene3D Transferase(Phosphotransferase) domain 1 139 198 - -
Trme67330g00001 198 PANTHER RUST RESISTANCE KINASE LR10-RELATED 36 198 IPR045874 GO:0004672
Trme67330g00001 198 FunFam serine/threonine-protein kinase PBS1-like 32 138 - -
Trme67330g00001 198 Gene3D Phosphorylase Kinase; domain 1 38 138 - -
Trme67330g00001 198 SUPERFAMILY Protein kinase-like (PK-like) 47 198 IPR011009 -
Trme67330g00001 198 ProSitePatterns Protein kinases ATP-binding region signature. 70 92 IPR017441 GO:0005524
Trme67330g00001 198 Pfam Protein tyrosine and serine/threonine kinase 66 198 IPR001245 GO:0004672|GO:0006468
Trme67330g00001 198 SMART serkin_6 64 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme67330g00001 Trme-Chr67330 1 594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme67330g00001 39 198 Receptor kinase-like Gene Family AT1G66910 59.375 1.51e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme67330g00001 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme67330g00001 - - mtr:11418569 346.665