Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme67138g00001 ATGTCGAGCGAAAGAAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAGATAACCAATGAGAGTAATATGCTAGTGACTTTCTCGAAGCGCCGTACTGGGCTCTTCAAGAAAGCTAGTGAGCTTAGCACTCTTTGTGGTGCAGATGTTGCTCTAATTATATTCTCACCTAGTGAAAAAGCATTTTCCTTTGGTCACCCTAATGTTGATACGGTCATAGATCGTTATCTCTCATTAGTCCCATCTCAAAACAATGGCGACATGCGGTTCATTGAGGCTGATGTGCGTGAGCTAAATCCTCAGCTGACTCGGTTCAACAATGCGCTGGACATTGAGAGAAGGCGTAGTGTTGAGCTGAGTCATATGGACAATATGAATGAAACTCAGTGTTGGAGGGATC 400 0.4375 MSSERKSRGRQKIEMKKITNESNMLVTFSKRRTGLFKKASELSTLCGADVALIIFSPSEKAFSFGHPNVDTVIDRYLSLVPSQNNGDMRFIEADVRELNPQLTRFNNALDIERRRSVELSHMDNMNETQCWRD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme67138g00001 133 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Trme67138g00001 133 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Trme67138g00001 133 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Trme67138g00001 133 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Trme67138g00001 133 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Trme67138g00001 133 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Trme67138g00001 133 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Trme67138g00001 133 PANTHER MADS BOX PROTEIN 10 114 - -
Trme67138g00001 133 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Trme67138g00001 133 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Trme67138g00001 133 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme67138g00001 Trme-Chr67138 441 840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme67138g00001 5 119 Type I MADS-box Gene Family AT5G60440 56.557 1.12e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme67138g00001 SRF-TF 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme67138g00001 - - tpra:123891791 247.284