Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme67048g00001 GTTAAAAAAGCTGGCTTTGTTGAACCTACACCCATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAAGGACGTGATCTGATAGGAATTGCAGAGACAGGATCAGGGAAGACTCTGGCTTATTTGTTACCTGCCATAGTGCATGTTAATGCCCAGCCAATTCTAGATCCTGGGGATGGGCCTATTGTCTTAGTTTTGGCCCCGACACGTGAACTTGCCGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCGTCAAGGATTAAGAGCACATGCATATATGGTGGGGTTCCTAAGGGCCCTCAAGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTCATTGCCACTCCGGGAAGGTTAATTGATATGATTGAGTCAAATCATACTAACTTGCGAAGGGTCACATACCTGGTATTGGATGAAGCTGATAGAATGTTGGACATGGGTTTTGATCCTCAGATTCGGAAAATTGTCTCTCAGGTGAATTTTTTATCGTCTGATTAA 504 0.4405 VKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQVNFLSSD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme67048g00001 167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 17 167 IPR014001 -
Trme67048g00001 167 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 160 - -
Trme67048g00001 167 SMART ultradead3 5 167 IPR014001 -
Trme67048g00001 167 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 138 146 IPR000629 -
Trme67048g00001 167 Pfam DEAD/DEAH box helicase 10 162 IPR011545 GO:0003676|GO:0005524
Trme67048g00001 167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 163 IPR027417 -
Trme67048g00001 167 Gene3D - 1 166 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme67048g00001 Trme-Chr67048 1 747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme67048g00001 1 157 Eukaryotic Initiation Factors Gene Family AT3G19760 34.810 8.57e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme67048g00001 K12823 - csav:115706932 308.916