LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme6701g00001	ATGGAGAGTGATACGAAACCGAATGTGTTAATGGAACGATATGAGTTAGGGAGGTTACTTGGTCAGGGAACGTTTGGAAAGGTTTACTATGCACGGAGTAGGGTAACTAACCAGAGTGTTGCCATTAAAGCGATTGACAAAGATAAGGTTATGAGAAGTGGTCATGCTGATCGAATCAAGCGCGAAATATATGTTATGAAATTGGCTAGACATCCGAATATTATACAGCTTTTTGAGGTTATGGCAACTAAGAGTAAAATTTACTTTGTTATCGAGTTTGCTAAAGGCGGTGAGCTTTTTAACAAGGTGGCTAAAGGAAAACTCAAAGAAGAAGTTGCACACAGATATTTTAAGCAGTTAATTAATGCGGTCGATTTTTGTCACAGTAGAGGCGTGTATCATCGAGACATTAAGCCTGAAAACATTCTATTGGATGAAAATGGGAATCTGAAGGTTTCTGATTTTGGGTTAAGTGCTCTTGTGGAATCAAATCAACAGGATATGATTCTCCGTACGCCTTGTGGCACTCCGGCCTATGTTGCTCCGGAAGTCATCAAAAGGAAAGGGTATGATGGTGCAAAAGCCGATATTTGGTCTTGTGGAATAGTTCTCTTTGTTTTATTGGCAGGTTATCTTCCTTTTCATGACTCAAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGTCCGAGTTGGTTTCAACCGGAAGTGTGCACGCTATTAAGCGAAATATTGGATCCAAAACCCGACACTAGGATTTCCATAGAAAAGATTAAGGAACATTTTTGGTTTAAAAATGGACCAAATGCTAGAAATAAAAAACCAAAAGTGGAAAACAGCAGTGTCTCTTCTTCAGGTACAGTTGTTTCCGATCAAAGTGTTGAAAACAACAGTCCAGAAGCTGAAACAAAGGAAGAGTCGGTCGTGCCGATCAGTATGAATGCCTTCGATATCATCTCCCTTTCTGCTAGTTTTGATCTTTCTAGATTCTTTAAAGAGGATGTTCAGAAAAAAGAAGCGAGATTTAGTTCGAAACTACCTGCTTCGGTCATTATCTCGAAGATGGAAGACATTGCTAAGCAACTGAGGATGAAAATTAAGAAAAAAGCTGCCGGTTTGTTGAAATTAGAGGGATTCAATGAAGGTAGGAAAGGGGTTTTATCTATTGATGCAGAGATCTTTGAGGTTACTCCTAATTTCCATTTAGTTGAGGTGAAAAAATCGAATGGAGATACTTTGGAATATCAGAAAATATTGAAAGAGGATATTAGGCCTGCTCTTCAAGATATTGTTTGGGTGTGGCAAACTGACCAACAACTGCAATCACAACAGTCAGATCAACCGCTACAGATACATGATCAGCAGCAACAACAACCACAGTCATAA	1398	0.387	MESDTKPNVLMERYELGRLLGQGTFGKVYYARSRVTNQSVAIKAIDKDKVMRSGHADRIKREIYVMKLARHPNIIQLFEVMATKSKIYFVIEFAKGGELFNKVAKGKLKEEVAHRYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVESNQQDMILRTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDSNLIEMYRKISKAELKCPSWFQPEVCTLLSEILDPKPDTRISIEKIKEHFWFKNGPNARNKKPKVENSSVSSSGTVVSDQSVENNSPEAETKEESVVPISMNAFDIISLSASFDLSRFFKEDVQKKEARFSSKLPASVIISKMEDIAKQLRMKIKKKAAGLLKLEGFNEGRKGVLSIDAEIFEVTPNFHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQTDQQLQSQQSDQPLQIHDQQQQQPQS	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme6701g00001	465	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468
	Trme6701g00001	465	FunFam	Non-specific serine/threonine protein kinase	312	436	-	-
	Trme6701g00001	465	Pfam	NAF domain	314	372	IPR004041	GO:0007165
	Trme6701g00001	465	MobiDBLite	consensus disorder prediction	277	301	-	-
	Trme6701g00001	465	MobiDBLite	consensus disorder prediction	273	310	-	-
	Trme6701g00001	465	ProSitePatterns	Protein kinases ATP-binding region signature.	20	43	IPR017441	GO:0005524
	Trme6701g00001	465	Gene3D	Transferase(Phosphotransferase) domain 1	101	315	-	-
	Trme6701g00001	465	FunFam	Non-specific serine/threonine protein kinase	8	311	-	-
	Trme6701g00001	465	CDD	CIPK_C	318	432	-	-
	Trme6701g00001	465	Pfam	Protein kinase domain	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme6701g00001	465	SMART	serkin_6	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme6701g00001	465	Gene3D	Phosphorylase Kinase; domain 1	8	100	-	-
	Trme6701g00001	465	ProSiteProfiles	NAF domain profile.	312	336	IPR018451	GO:0007165
	Trme6701g00001	465	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	8	431	-	-
	Trme6701g00001	465	SUPERFAMILY	Protein kinase-like (PK-like)	10	305	IPR011009	-
	Trme6701g00001	465	ProSiteProfiles	Protein kinase domain profile.	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme6701g00001	465	FunFam	Non-specific serine/threonine protein kinase	5	93	-	-
	Trme6701g00001	465	Gene3D	Kinase associated domain 1, KA1	316	437	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme6701g00001	Trme-Chr6701	501	1898	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme6701g00001	4	442	CBL-interacting serine-threonine protein kinases	AT5G58380	63.858	0.0	603

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Trme6701g00001		Pkinase	9.9e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme6701g00001	-		-	gmx:100790905	679.863