Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66929g00001 ATGCTTGCTGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGATATAAGAGATCAGGTTGCAATTCACGAGGCTATGGAACAACAAACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTCAATGCTCGTACTTCCATTCTTGCTGCTGCCAACCCTGCTGGAGGACGTTACGATAGGTCTAAACCACTGAAGTACAATGTGGCTCTTCCACCAGCTATACTTTCAAGGTTCGATCTTGTATACATTATGATTGATGACCCAGACGATGTTACAGATTACCACATAGCTTCTCATATTGTGCGAGTTCATCAAAAGCGCGAAGAAGCTCTTGCTCCAACGTTCACTACAGCAGAACTGAAGCGTTATATAGGCTATGCAAAAACTCTTAAACCAAAG 408 0.4167 MLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDRSKPLKYNVALPPAILSRFDLVYIMIDDPDDVTDYHIASHIVRVHQKREEALAPTFTTAELKRYIGYAKTLKPK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66929g00001 136 PRINTS Mini-chromosome maintenance (MCM) protein family signature 50 62 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme66929g00001 136 PRINTS Mini-chromosome maintenance (MCM) protein family signature 26 39 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme66929g00001 136 PRINTS Mini-chromosome maintenance (MCM) protein family signature 77 85 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme66929g00001 136 Pfam MCM P-loop domain 1 107 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme66929g00001 136 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 129 IPR027417 -
Trme66929g00001 136 ProSitePatterns MCM family signature. 6 14 IPR018525 GO:0003677|GO:0005524|GO:0006260
Trme66929g00001 136 ProSiteProfiles MCM family domain profile. 1 103 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme66929g00001 136 SMART mcm 1 136 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme66929g00001 136 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 1 136 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme66929g00001 136 Gene3D - 1 136 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme66929g00001 Trme-Chr66929 13 580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66929g00001 1 136 Core DNA Replication Machinery Family AT5G44635 89.706 3.52e-84 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66929g00001 K02542 - csav:115697859 263.462