Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme667g00001 ATGGCTACAACCTCTAATNCATCCTCTACCACTTCAGAAGGTATTTCCCAAAAAAGTTGTGATGAAGAGAACAACATCAACAACAAGGGGAAGGAAGTTGTCCAATGTCAACAACATCAACCTTCAAACTCCAATACAAAATTGCTTCTTGATTTCATCAAGCTCTCAAACGATGATTCAATTCGTGGGTCGAAAGTGCAAGAGCATGATTTTTTCACCCCCACAAAAAATTTGGAGGTTGGTTCATCTTCGTTAAGTTGGGCTAATAATAAGACCAACAATGAAGAGAACCCTAAGAGTAAGTCCTCTGACTCGAAGACTTTTTCATGCAGTTTTTGTAAGAAACAATTTTCTACTTCACAAGCTTTAGGAGGGCACCAAAATGCTCATAAGCGTGAGCGTGCACTCGCAAAACATCGTCAAGAGATGCATAATGGTTTTGGGATCCCTCGCCATCCTTTTCCTTACTACACTAATTATCCTAGCCTTTCTTCATCTTATTATGGGTTTGGATCCTTTAATAAAGCACTTGGAATTAGGATGGAGTCCATGATCCACAAGCCAAGCTATTCATTGACCCCACCTCCCTATAAGTTCGGTTCTACTCCTACATGGACCCCAATGCAAGAGATGAGAAACTTTTCTTCACTTGGTGGATTGAAGATCGAGGGTCTTAACACAAATAATGGAAGTAGTGCAACTCCAACTTGGAGGAATAATGTGATAAAATTAGATAATATTGGAGAGTCATCTATAAATGTTGCTACAAAGTCAAACTTAATAGTAGACAAGTCAACTGTGATCGTTACAGATAATGATCATCATGGTATGAAGAAGAAAGAAGACTCTGATTCAGAATCTACTGAGCTTGATTTGACGCTTAAGCTTTGA 891 0.3883 MATTSNXSSTTSEGISQKSCDEENNINNKGKEVVQCQQHQPSNSNTKLLLDFIKLSNDDSIRGSKVQEHDFFTPTKNLEVGSSSLSWANNKTNNEENPKSKSSDSKTFSCSFCKKQFSTSQALGGHQNAHKRERALAKHRQEMHNGFGIPRHPFPYYTNYPSLSSSYYGFGSFNKALGIRMESMIHKPSYSLTPPPYKFGSTPTWTPMQEMRNFSSLGGLKIEGLNTNNGSSATPTWRNNVIKLDNIGESSINVATKSNLIVDKSTVIVTDNDHHGMKKKEDSDSESTELDLTLKL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme667g00001 296 Pfam C2H2-type zinc finger 108 132 - -
Trme667g00001 296 Gene3D Classic Zinc Finger 83 147 - -
Trme667g00001 296 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Trme667g00001 296 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 296 IPR044246 GO:0009788
Trme667g00001 296 MobiDBLite consensus disorder prediction 83 102 - -
Trme667g00001 296 SUPERFAMILY beta-beta-alpha zinc fingers 104 135 IPR036236 -
Trme667g00001 296 MobiDBLite consensus disorder prediction 273 292 - -
Trme667g00001 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Trme667g00001 296 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme667g00001 Trme-Chr667 816 1706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme667g00001 100 189 C2H2 Transcription Factor Family AT5G10970 46.809 5.45e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme667g00001 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme667g00001 - - tpra:123886838 376.326