Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6677g00001 CTTGAGTGGAACTTAAACAGGACTGCTACTGGCTCCCACCGATTGAAGATAACAGCCAATGCCACAAAGACAGTGGCAGAAGTTAGGAGACGTCTGGAAGAACTGTCTCGAGGGAAAATCATTGAGCACGACAGCCTCACCCCTGCAGCTCTACAGCTCCTGTTGTCCAGAGATGGCATTAGTCTTAAATGCTCAATACAGCAAGAGACTACAACTTATATTATTTTTGACAGGCACAACCTGAATTTACGGATTTTTGGTTCACCAGACAAGATTACTTTGGCTCAGCAGAAATTAATTCAATCTCTATTGTCCATCCATGAAAAAAAGCAGTTAGTAATCCCTCTGAGAGGGAGGGACCTACCTTCTGACTTAATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTTCATGGACTAAAAGAGAAGGTACCTGGAGCTGATCTTAAACTTAACACACGCCAACAGATGATCTTTCTTCATGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAATAACTCTTGAGATTGCCCGTTCAGGCCATCATTTAGTTGAGAGACTTGACACGGGACCCAGTTGCCCAATTTGCTTGTGTGATGTTGAGCATGGATATCAACTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATATGTTGTGCTCACAAGGGCTGTGGAGATCCTATTCTGCTTGCAGATTTCAGAACTCTCCTGTCAAATGAAAAGTTGGATGAACTTTTCAGGGCATCTTTGGGAGCTTTTGTAGCTTCAAGTTCGGGAAGTTATAGGTTTTGCCCGTCGCCTGACTGCCCCTCAATTTATCGAGTTGCAGATCCCGACACAGCTAGTGAGCCATTTATTTGTGGGGCATGTTATTCAGAGACTTGTACCAAGTGTCACATAGAGTATCATCCATACCTTTCKTGTGAGAGATACAGAGAGCTCAAGGATGACCCAGACTCATCTCTGAAGGAGTGGTGTAAAGGGAAAGAACAAGTGAAGAGCTGTTTTGCTTGTGGGCAAATAATTGAGAAGATAGATGGGTGCAATCACGTTGAGTGCAAGTGCGGAAAGCATGTCTGCTGGGTTTGCTTGGAAATCTTCACAAAAAGTGATGAATGCTATGATCATTTGAGAACTATACACATGACAATATAA 1209 0.4342 LEWNLNRTATGSHRLKITANATKTVAEVRRRLEELSRGKIIEHDSLTPAALQLLLSRDGISLKCSIQQETTTYIIFDRHNLNLRIFGSPDKITLAQQKLIQSLLSIHEKKQLVIPLRGRDLPSDLMKQVVKNFGPDLHGLKEKVPGADLKLNTRQQMIFLHGNKELKPRVEEITLEIARSGHHLVERLDTGPSCPICLCDVEHGYQLEGCGHLFCRLCLVEQCESAIKNQGSFPICCAHKGCGDPILLADFRTLLSNEKLDELFRASLGAFVASSSGSYRFCPSPDCPSIYRVADPDTASEPFICGACYSETCTKCHIEYHPYLSCERYRELKDDPDSSLKEWCKGKEQVKSCFACGQIIEKIDGCNHVECKCGKHVCWVCLEIFTKSDECYDHLRTIHMTI 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6677g00001 402 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Trme6677g00001 402 SUPERFAMILY RING/U-box 348 396 - -
Trme6677g00001 402 ProSitePatterns Zinc finger C2H2 type domain signature. 378 399 IPR013087 -
Trme6677g00001 402 PANTHER UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED 89 387 - -
Trme6677g00001 402 ProSiteProfiles Zinc finger RING-type profile. 194 236 IPR001841 -
Trme6677g00001 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 270 IPR013083 -
Trme6677g00001 402 SMART ibrneu5 261 326 IPR002867 GO:0008270
Trme6677g00001 402 SMART ibrneu5 327 391 IPR002867 GO:0008270
Trme6677g00001 402 Gene3D - 322 400 - -
Trme6677g00001 402 SUPERFAMILY RING/U-box 276 331 - -
Trme6677g00001 402 SUPERFAMILY RING/U-box 193 264 - -
Trme6677g00001 402 Pfam IBR domain, a half RING-finger domain 270 326 IPR002867 GO:0008270
Trme6677g00001 402 ProSiteProfiles TRIAD supradomain profile. 190 398 IPR044066 -
Trme6677g00001 402 CDD BRcat_RBR 276 329 - -
Trme6677g00001 402 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 322 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6677g00001 Trme-Chr6677 399 1607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6677g00001 209 387 C3H Transcription Factor Family AT2G31770 26.738 3.76e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6677g00001 K12818 - psat:127123877 741.11