Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme667756g00001 TGGAACCCACCGGAACCCGCGGATACTTTGGCACCTGAGATAACCAAGGGTGAAGGTCACGGAAGTGCAGTTGATTGGTGGACTTATGGAATCTTTCTATACGAGCTTTGCAGCAAGGGATCTTATAAGGGGATTGCTTGTAAAGGAACCTCTTCACGGGCTACCTCTTGCGCCAGCGAAAAGACTGTTGTTAACCACATGCCAACAACTCCTAATCAGAAAGGTTCTGATTAA 234 0.4744 WNPPEPADTLAPEITKGEGHGSAVDWWTYGIFLYELCSKGSYKGIACKGTSSRATSCASEKTVVNHMPTTPNQKGSD 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme667756g00001 77 Gene3D Transferase(Phosphotransferase) domain 1 8 38 - -
Trme667756g00001 77 SUPERFAMILY Protein kinase-like (PK-like) 10 40 IPR011009 -
Trme667756g00001 77 PANTHER FLIPPASE KINASE 1-RELATED 9 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme667756g00001 Trme-Chr667756 2 235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme667756g00001 10 55 AGC Kinase Gene Family AT1G79250 63.043 4.91e-14 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme667756g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme667756g00001 K08286 - ncol:116264097 64.3142