Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66675g00001 ATGAAAATTTTGCATTTCGATATCAAGCCCCACAATATCTTGCTTGACGAGAACTTGATCCCAAAGATATCTGATTTTGGACTGGCAAAGTTATATCCGGTACAGAATAGCATTATCACAATGACTGCGGCAAAAGGTACAATTGGATATATGGCTCAAGAATTATTTTACAAGAATATTGGCGGAGTGTCTTATAAGGCCGATGGGTATAGTTTTGGAATGGTTTTGATGGAGATGGCAAGTAAAAGGAAAAACATGAATCCTCATGCAGAGCATTCTAGCCAGCATTACTTTCCCTTTTGGATTTATGATCAACTTGAAAAAAGGGGAGAAATAGAATTAGAAGATGTCCCGGGGGAGGATATGAAAATAGTAAAGAAGATGATCATGGTCGCTCTTTGGTGTATACAAATTAACCCAAATGATCGTCCCTCCATGAGTAAAGTAGTCGAGATGCTTGAAGGAGATATCGAATGCCTTGAAATGCCTCCAGAGCCAACTATGTATCCAGATGAAATGATTTCAATGGATGAAACAAGAAACCCAGAGCAAACAGTATCAACTATCAAGTGA 573 0.3839 MKILHFDIKPHNILLDENLIPKISDFGLAKLYPVQNSIITMTAAKGTIGYMAQELFYKNIGGVSYKADGYSFGMVLMEMASKRKNMNPHAEHSSQHYFPFWIYDQLEKRGEIELEDVPGEDMKIVKKMIMVALWCIQINPNDRPSMSKVVEMLEGDIECLEMPPEPTMYPDEMISMDETRNPEQTVSTIK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66675g00001 190 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Trme66675g00001 190 Pfam Protein kinase domain 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme66675g00001 190 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme66675g00001 190 Gene3D Transferase(Phosphotransferase) domain 1 1 169 - -
Trme66675g00001 190 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 175 IPR045874 GO:0004672
Trme66675g00001 190 SUPERFAMILY Protein kinase-like (PK-like) 2 175 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme66675g00001 Trme-Chr66675 197 769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66675g00001 2 185 Receptor kinase-like Gene Family AT4G18250 52.356 1.34e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme66675g00001 Pkinase 2.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66675g00001 - - vvo:131596098 317.775