Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66595g00001 CGTAGGCACTTGCTTACAACAGGATGGAGTAGTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTTGTGTTTCTGAGGGCTGAGAATGGTGAATTGTGTGTTGGAATTCGAAGGGCGAAAAAGGGAATTGGTAGTGGTTTTGATGGTTCATCTTGTGGTTGGACTTCTGGTTCAGGTTCTAACAATGGAAATTGTGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNTGATGGTAATTTGAGTGGACGAGTGAGAGTGAGACATGAAGATGTTATGGAAGCTGTGAAATTGGCTGCTAATAACCAACCATTTGAAGTTGTTTACTATCCAAGAGCAAGCACTCCTGAGTTTTGTGTCAAGGCTTCATCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGAATGAGGTTCAAGATGCCTTTTGAAACTGAGGACTCTTCTAGGATTAGTTGGTTTATGGGAACCATTGCTTCTGTTCAGGTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNTTGCTTTGTCAATCAATGATCAGTTTTATGGTCATCTCTGA 684 0.3099 RRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGSGFDGSSCGWTSGSGSNNGNCXXXXXXXXXXXXXXXXXXXXXXXXXXDGNLSGRVRVRHEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSINDQFYGHL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66595g00001 227 Coils Coil 179 179 - -
Trme66595g00001 227 ProSiteProfiles B3 DNA-binding domain profile. 1 42 IPR003340 GO:0003677
Trme66595g00001 227 CDD B3_DNA 1 40 IPR003340 GO:0003677
Trme66595g00001 227 Gene3D - 1 42 IPR015300 -
Trme66595g00001 227 Gene3D - 148 184 - -
Trme66595g00001 227 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 179 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme66595g00001 227 Pfam B3 DNA binding domain 1 41 IPR003340 GO:0003677
Trme66595g00001 227 Pfam Auxin response factor 111 179 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme66595g00001 227 SUPERFAMILY DNA-binding pseudobarrel domain 1 42 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme66595g00001 Trme-Chr66595 1 684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66595g00001 1 179 B3 DNA Binding Superfamily AT4G30080 56.614 1.44e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trme66595g00001 Auxin_resp 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66595g00001 - - gmx:100814686 225.713