Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6652g00001 ATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAGATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTTGAAGTTTATTTAAGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACGAAAACTGAAGAAAGAGGCTCTCTACTACGGAAATTTAATGCCCCTGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCAGGTGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGAATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACGTCAACAGCCCAGGACAGACGAGAAATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGGGCAGATGTGCCTAGTGAAAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTCGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAACTACAAATCACGTCTCATGGAAGAGCGTGAATTGCCAGATTGGGTGTATGCTCCAATTCAAAAGGATGACAAGTCCAAAAATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGATGTGGTATATGCTGATACATTGAGTGAATTACAATGGATGAAAGCTATGGAGAATGGGGAGGATATGTCAAAGCTTTCAGCTAAAGGGAAAAGAAGAGAGTCAAGAGACTACCTCTCATCTGACAGCATAGCACGAGCCAGCGATAATACAGGGGCAGTTGAAAACTTATCAGGGTCAAGGACTAAATTTGCCCCCACGGCAAATGAGAGAACGAGTGAAGACAGTTTCCATGTTACTCCTTCCTCAAAGAGATTCAAGCCTGACGGAACAAATTTCCAGAAACATGCACACGAAGATGTCAGCGGAAGTGGTTTAAACCAGCATGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGCCATCCTGGCCAGG 1231 0.4314 MQLRKCCNHPYLFVGDYDMYRCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYKSRLMEERELPDWVYAPIQKDDKSKNFNSGVTGKRKRKDVVYADTLSELQWMKAMENGEDMSKLSAKGKRRESRDYLSSDSIARASDNTGAVENLSGSRTKFAPTANERTSEDSFHVTPSSKRFKPDGTNFQKHAHEDVSGSGLNQHVFSWNTHKKKRSSHPGQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6652g00001 410 SMART helicmild6 61 145 IPR001650 -
Trme6652g00001 410 MobiDBLite consensus disorder prediction 325 360 - -
Trme6652g00001 410 FunFam Probable ATP-dependent DNA helicase CHR12 1 251 - -
Trme6652g00001 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 203 IPR027417 -
Trme6652g00001 410 MobiDBLite consensus disorder prediction 306 324 - -
Trme6652g00001 410 MobiDBLite consensus disorder prediction 306 410 - -
Trme6652g00001 410 Gene3D - 1 255 IPR027417 -
Trme6652g00001 410 PANTHER SNF2/RAD54 HELICASE FAMILY 1 315 - -
Trme6652g00001 410 SMART SnAC_2 238 298 IPR029295 GO:0042393
Trme6652g00001 410 CDD SF2_C_SNF 23 156 - -
Trme6652g00001 410 Coils Coil 233 256 - -
Trme6652g00001 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 35 196 IPR001650 -
Trme6652g00001 410 Pfam Snf2-ATP coupling, chromatin remodelling complex 239 298 IPR029295 GO:0042393
Trme6652g00001 410 Pfam Helicase conserved C-terminal domain 32 145 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6652g00001 Trme-Chr6652 20 1720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6652g00001 30 173 RAD5 or RAD16-like Gene Family AT5G22750 36.986 1.19e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6652g00001 - - gmx:100786280 719.539