Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6650g00001 ATGATGTTATCTAGAACAATGAATAGAGGAATTGAAGTTCTATCTCCAGCTTCCTATATCCAAAATTCCAATTGGTTGTTTGAAGAAAACAAGGGTTCTAAGTGGACTCAAGAAGAGAATAAGCTGTTTGAGAATGCTTTAGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTAGCAGAGATGATTCCTGGAAAAACTGTAGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCCGGTTTGATACCGGTTCCTGGTTATACAACTAGTTCTTTCACATTGGATTGGGATAACAATCAAGGCTTTGATGAGTTTAAGCAATTTTGTAGTGTTGGTGAGAAAAGGGGCGGTTCGACTCGGCCGTCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAGCATAGGCAATTTCTGTTGGGTCTTAAGAAGTATGGTAAGGGAGACTGGAGAAATATTTCTAGGAATTTTGTGACGACAAGGACTCCAACTCAAGTCGCAAGTCATGCTCAGAAGTATTTCATAAGGCAAGTTTCAGGAGGGAAGGATAAGAGAAGATCCAGTATCCATGATATCACAGTGGTTAATCTCCAAGAAACTAAATCTCCTTCATCAGACAGTAACAACCCTTCTTCTCCAGACCATTTGGTGAATGTCGCGAATCAACCGCAGAATCATAATTTATCCAGCATGGTTAAGCAGGAATATGACTTGAAATTACCAGATGAGGAGGGTATGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTTTGTGGCACCATTGTGCGGGATTTCTTCACACGAATCGAAATCACCGGGACATAATATACTCCGAGGCACTCACCATGGATTCCAGTTTTCACCTTTTGATACTATTTTCCAAATGCAATCTATGCAGCATCAATGA 945 0.4021 MMLSRTMNRGIEVLSPASYIQNSNWLFEENKGSKWTQEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDNNQGFDEFKQFCSVGEKRGGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQVSGGKDKRRSSIHDITVVNLQETKSPSSDSNNPSSPDHLVNVANQPQNHNLSSMVKQEYDLKLPDEEGMPFVFNSTKGNMFVAPLCGISSHESKSPGHNILRGTHHGFQFSPFDTIFQMQSMQHQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6650g00001 314 CDD SANT 141 186 IPR001005 -
Trme6650g00001 314 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Trme6650g00001 314 CDD SANT 34 80 IPR001005 -
Trme6650g00001 314 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 29 254 IPR043363 -
Trme6650g00001 314 FunFam transcription factor MYB1R1 140 191 - -
Trme6650g00001 314 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Trme6650g00001 314 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Trme6650g00001 314 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Trme6650g00001 314 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Trme6650g00001 314 Gene3D - 140 190 - -
Trme6650g00001 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Trme6650g00001 314 Gene3D - 26 94 - -
Trme6650g00001 314 MobiDBLite consensus disorder prediction 128 142 - -
Trme6650g00001 314 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Trme6650g00001 314 SMART sant 138 188 IPR001005 -
Trme6650g00001 314 SMART sant 31 83 IPR001005 -
Trme6650g00001 314 SUPERFAMILY Homeodomain-like 135 189 IPR009057 -
Trme6650g00001 314 MobiDBLite consensus disorder prediction 123 142 - -
Trme6650g00001 314 FunFam Transcription factor SRM1 27 94 - -
Trme6650g00001 314 SUPERFAMILY Homeodomain-like 33 88 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6650g00001 Trme-Chr6650 252 1930 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme6650g00001 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6650g00001 - - var:108329798 480.715