Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66472g00001 TTTTCAAATTTTCCAGAAAATGGAGAATACAAGGATATACCGGTCAAATATCCCATTGATGATCTATTGGTGAAGCCTAGTCCAGACGACCCTGTGTTCACTGATCGTCCTTCTCTATCAAGAGACTTCAATGTTCCAATGTACTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTACTTCTTTTGGTAAACAGTTAAACTTGTGGCCCTACTCTTTGGAAGATTTTGAAAATGCAATCTGCAATAAGGATAGCAATGTGCTCCTTGTGGAATCTCATGCTGCACTTTTTCGAGTTCTTATCGATGATGATGGTGAATACACTTCAGCTATAGAGAATCGAAAGTTGCAGAAGGTTACCATCTAA 369 0.3875 FSNFPENGEYKDIPVKYPIDDLLVKPSPDDPVFTDRPSLSRDFNVPMYCVGDLLMVWDFCTSFGKQLNLWPYSLEDFENAICNKDSNVLLVESHAALFRVLIDDDGEYTSAIENRKLQKVTI 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66472g00001 122 ProSiteProfiles DDT domain profile. 47 107 IPR018501 -
Trme66472g00001 122 Pfam DDT domain 49 104 IPR018501 -
Trme66472g00001 122 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 14 117 - -
Trme66472g00001 122 SMART testlast3 47 107 IPR018501 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66472g00001 49 104 Homeobox Transcription Factor Family AT1G28420 48.214 1.94e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trme66472g00001 DDT 2.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66472g00001 - - var:108323886 183.726