Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66403g00001 GGATCAGAAGTGCTGCATAGCATGCTTGCTAATGCTACTCCAGAGCAGCAGAAAGAGATACTTGGCGAGCATCTCTACATGCTAGTCCAGAAACTCAAGCCTAACCTAGCAGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGCTGAATTGCTGGTTCTCATGGAATCACCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTTTCCAAGTGCTGAAGAACTCTAAAACTAAAGTTTCTGGTCAGGATGTACTTCATTCGAATTTCCTCTCAGCCGAGGTTGCAGTGAACTGA 297 0.4545 GSEVLHSMLANATPEQQKEILGEHLYMLVQKLKPNLAAKITGMLLEMDNAELLVLMESPESLSAKVEEAFQVLKNSKTKVSGQDVLHSNFLSAEVAVN 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66403g00001 98 SUPERFAMILY PABC (PABP) domain 5 85 IPR036053 GO:0003723
Trme66403g00001 98 Pfam Poly-adenylate binding protein, unique domain 8 73 IPR002004 GO:0003723
Trme66403g00001 98 FunFam Polyadenylate-binding protein 1 85 - -
Trme66403g00001 98 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 78 IPR002004 GO:0003723
Trme66403g00001 98 SMART poly_2 13 76 IPR002004 GO:0003723
Trme66403g00001 98 Gene3D - 1 93 - -
Trme66403g00001 98 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 14 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme66403g00001 Trme-Chr66403 1 378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66403g00001 5 82 Eukaryotic Initiation Factors Gene Family AT1G49760 57.692 6.41e-23 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66403g00001 K13126 - gmx:100804671 171.785