Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme663830g00001 ATGTATAAAGCTGTTCTTGAAGATGGAACTTCTTTAGCGGTTCGGAGAATTGGTGAAAGTGGTGTTGAACGGTTCAAGGATTTTGAGAATCAGGTTCGGGTTATAGCGAAACTGGTTCATCCTAATTTGGTTCGGGTTCGTGGGTTTTATTGGGGTCATGATGAGAAACTCATTATCTATGACTTTGTTCCTAATGGTTGTCTTGCCAAT 210 0.4048 MYKAVLEDGTSLAVRRIGESGVERFKDFENQVRVIAKLVHPNLVRVRGFYWGHDEKLIIYDFVPNGCLAN 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme663830g00001 70 Gene3D Phosphorylase Kinase; domain 1 1 62 - -
Trme663830g00001 70 Pfam Protein tyrosine and serine/threonine kinase 10 69 IPR001245 GO:0004672|GO:0006468
Trme663830g00001 70 ProSiteProfiles Protein kinase domain profile. 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme663830g00001 70 PANTHER OS05G0588300 PROTEIN 2 67 - -
Trme663830g00001 70 SUPERFAMILY Protein kinase-like (PK-like) 2 69 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme663830g00001 Trme-Chr663830 17 226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme663830g00001 1 70 Receptor kinase-like Gene Family AT5G67280 77.143 2.23e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme663830g00001 PK_Tyr_Ser-Thr 2.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme663830g00001 - - gmx:100776204 146.362