Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66361g00001 GATTTTGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCAGAAATCAGGAGGAATTCGAAAACGAAATCGGGCGACTAGGTAACATTCAACACCATAATTTGGTTGCCTTTCAAGGTTACTACTGGTCCTCTTCAATGCAGTTGATTTTGTCAGAGTTTGTTTCAAATGGGAATCTTTATGATAATCTACATGGGCATGGTTATCCTGGAACAAGCACAAGTAGAGGCAATAGGGAATTAGATTGGTCTAGAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCCCTTGCCTATCTCCACCACGACTGTCGACCTCCAATCCTTCACCTCAACCTTAAATCCTCTAATATTCTCTTAGATGACAAGTATGAAGCCAAGTTATCTGATTATGGATTAGGAAAGTTGTTACCGATTTTGGATAATTACGGTTTGACCAAGTTCCACAATGCTGTTGGTTATGTTGCACCAGAGTTAGCTCAAAGCTTTAGACAGAGTGAGAAGTGTGATGTTTATAGTTTCGGCGTCATTCTTTTGGAGCTAGTTACAGGGAGGAAGCCTGTAGAAAGTCCAACCACAAGTGAGGTTGTGGTTTTGTGTGAATACGTGAGAAGCCTGTTGGAGACTGGCTCGGCTTCACATTGCTTTGATAGAAATTTACTGGGATTTACTGAGAGTGAATTGATTCAGGTTATGAGATTAGGGATAATATGTACTTCAGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGATTGTTCAGGTCCTTGAGTCCATCAGAAATGGATTGGAATCTCATTAA 816 0.413 DFEGGISIAVKKLETLGRIRNQEEFENEIGRLGNIQHHNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGHGYPGTSTSRGNRELDWSRRFQIALGTARALAYLHHDCRPPILHLNLKSSNILLDDKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQSFRQSEKCDVYSFGVILLELVTGRKPVESPTTSEVVVLCEYVRSLLETGSASHCFDRNLLGFTESELIQVMRLGIICTSEDPLRRPSMAEIVQVLESIRNGLESH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66361g00001 271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 5 266 - -
Trme66361g00001 271 SUPERFAMILY Protein kinase-like (PK-like) 5 262 IPR011009 -
Trme66361g00001 271 Gene3D Transferase(Phosphotransferase) domain 1 64 270 - -
Trme66361g00001 271 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 60 270 - -
Trme66361g00001 271 PIRSF ILK 4 271 - -
Trme66361g00001 271 Gene3D Phosphorylase Kinase; domain 1 2 63 - -
Trme66361g00001 271 ProSiteProfiles Protein kinase domain profile. 1 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme66361g00001 271 Pfam Protein tyrosine and serine/threonine kinase 6 261 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme66361g00001 Trme-Chr66361 29 844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66361g00001 2 270 Receptor kinase-like Gene Family AT1G12460 75.277 2.23e-146 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trme66361g00001 PK_Tyr_Ser-Thr 2.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66361g00001 - - mtr:11437247 506.908