Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66328g00001 ATGTCCAGTTGTGTTCCATTATCTGTTGGGTTGCAATTTTTTGTGAAGTTTGAATATCAACTGTTGGCTCACTTGTTTGCAGGTAGGCCAATTATTGTTGATTTCTCTCCAGTGACNGACTTTCGTGAGGCTACATGCAGGCAGTATGAGGAGAATACTTGCAACCGTGGTGGTTATTGCAACTTCATGCACTTGAAACGGATTAGCAGGGAATTGAGGCGCCAGTTGTTTGGAAAGCGTCATGAGAGGCACAGCAGGAGCCGGAGCAGGAGTCCTTACAGGCATCGGAGTTATGAGGAGTGGTCTCATCGCAGTCGTAGCAGTAAGTATGATGACAGGGACAGAGACAGAGACTATCATCRTGACAGTGATAGCAGGAGGCGYAGAACCTCAAGYCCTGGACGGAGGAGGGGAAGGAGTCCCAGTCGCAGTCGAAGTCCTGTTGGAAGGAGGAACCGCAGTCCAGTCAGGGATGGCAGTGAGGAGAGACGTGCGAGAATTGAGCAGTGGAACAGGGAGAGGGAACAGAAAGAACCTGCAATCAAGGTTAATACAGAGGAAACCAATAATGGCAATAACGGGGGGCACTCGCAAAATGCTAGCACATTTCATGAGAATCAGCAGCAACATCAATCTGCTCAGGAGGGATATTGA 654 0.4862 MSSCVPLSVGLQFFVKFEYQLLAHLFAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRELRRQLFGKRHERHSRSRSRSPYRHRSYEEWSHRSRSSKYDDRDRDRDYHXDSDSRRRRTSSPGRRRGRSPSRSRSPVGRRNRSPVRDGSEERRARIEQWNREREQKEPAIKVNTEETNNGNNGGHSQNASTFHENQQQHQSAQEGY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66328g00001 217 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 24 171 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme66328g00001 217 MobiDBLite consensus disorder prediction 108 217 - -
Trme66328g00001 217 MobiDBLite consensus disorder prediction 183 217 - -
Trme66328g00001 217 MobiDBLite consensus disorder prediction 130 146 - -
Trme66328g00001 217 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 42 65 IPR000571 GO:0046872
Trme66328g00001 217 ProSiteProfiles Zinc finger C3H1-type profile. 40 67 IPR000571 GO:0046872
Trme66328g00001 217 MobiDBLite consensus disorder prediction 108 129 - -
Trme66328g00001 217 MobiDBLite consensus disorder prediction 151 182 - -
Trme66328g00001 217 PRINTS U2 auxiliary factor small subunit signature 57 69 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme66328g00001 217 PRINTS U2 auxiliary factor small subunit signature 22 46 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme66328g00001 Trme-Chr66328 2 747 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme66328g00001 zf-CCCH 5.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66328g00001 K12836 - gmx:100794975 194.126