Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66270g00001 CTCTTTAATACGTGCTTGGCTTGTAGATATTTCAAAGGTCCGGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTGTGGAGTCTTGGTTGTATGTTTGCCGGGATGATATTCCGGAAGGAACCCTTCTTTTATGGACACGATAACTATGATCAACTGGTCAAGATAGCCAGGATAATTCAATACTCTGCTTATACTATTGCTTTGGTTATTTAA 225 0.3822 LFNTCLACRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIARIIQYSAYTIALVI 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66270g00001 74 PANTHER CASEIN KINASE II SUBUNIT ALPHA 2 62 IPR045216 GO:0004674|GO:0006468
Trme66270g00001 74 Gene3D Transferase(Phosphotransferase) domain 1 2 64 - -
Trme66270g00001 74 SUPERFAMILY Protein kinase-like (PK-like) 3 63 IPR011009 -
Trme66270g00001 74 ProSiteProfiles Protein kinase domain profile. 1 74 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme66270g00001 74 Pfam Protein kinase domain 5 64 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme66270g00001 Trme-Chr66270 3 435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66270g00001 9 59 Core Cell Cycle Gene Families AT1G73690 43.137 1.88e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Trme66270g00001 Pkinase 1.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66270g00001 K03097 - zof:122015108 123.25