Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66225g00001 CGTTATGTGGCCCTTAAAATTCAAAAGAGCGCGCAACACTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAAATTGGAGAGGGTGACCCTGATGACAAGAAATGTGTTGTGAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCATACATGTGTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACCCTTATCAAATATAGTGACTATCGTGGAGTTCCTCTTTCCATGGTTAAAGAAATATGTTTTCACATTTTGGTGGGCTTGGATTATTTGCACCGCGAGCTTTCTGTCATACACACTGATTTGAAGCCAGAGAATGTATTGCTTCTTTCACTTATAGATCCGTGTAAGGATCCAAGGAAATCAGGTGCTCCACTTATTCTTCCAAACACCAAGGATAAGGCTTTGTCTAATAATGGCACTTTCCAAAACAGTAAAATTGGGAATGGAGATCCGACAAAGAAGAAGAAAATGCAAGGAAATGCTAAGAGGGTGGCTCAAGGCTGTATTGAGAAGGAAAGTCCAGAGGAAGCTGGGGAGGACTTTAAAGAACCCGGACAGGAAAATTGTAAAAATCATGTGAAATCAAGTGTAGAATCTTCTGAAAATAAACCCAATAGTTCTTTCAGTGAGGGTGAATCAACACA 668 0.3982 RYVALKIQKSAQHYTEAAMDEIKILKQIGEGDPDDKKCVVKLLDHFKHSGPNGIHVCMVFEFLGDNLLTLIKYSDYRGVPLSMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSLIDPCKDPRKSGAPLILPNTKDKALSNNGTFQNSKIGNGDPTKKKKMQGNAKRVAQGCIEKESPEEAGEDFKEPGQENCKNHVKSSVESSENKPNSSFSEGEST 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66225g00001 222 Gene3D Phosphorylase Kinase; domain 1 1 59 - -
Trme66225g00001 222 Pfam Protein kinase domain 3 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme66225g00001 222 Gene3D Transferase(Phosphotransferase) domain 1 60 216 - -
Trme66225g00001 222 MobiDBLite consensus disorder prediction 206 222 - -
Trme66225g00001 222 MobiDBLite consensus disorder prediction 139 156 - -
Trme66225g00001 222 ProSiteProfiles Protein kinase domain profile. 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme66225g00001 222 SUPERFAMILY Protein kinase-like (PK-like) 1 117 IPR011009 -
Trme66225g00001 222 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 1 215 - -
Trme66225g00001 222 MobiDBLite consensus disorder prediction 134 222 - -
Trme66225g00001 222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
Trme66225g00001 222 SMART serkin_6 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme66225g00001 222 MobiDBLite consensus disorder prediction 176 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme66225g00001 Trme-Chr66225 179 846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66225g00001 1 143 EF-hand Containing Proteins AT5G22840 84.615 5.97e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trme66225g00001 Pkinase 2.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66225g00001 K08832 - gmx:100790060 352.829