Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66122g00001 GGAAGCGGAGAACAAAACGACGTTGGTAGAGCCTTTAACCACAGAGATGAACACGAACATGAACAACAACACCATAACTCTCAACCCCTAACCGGTGATGGTGCAAGTCCTGGAAAGATATTTATAGGCGGTTTAGCGAGAGAAACGACAATTGCTCAATTTATCAAACACTTTGGTAAATATGGCGAGATTACTGATTCCGTTATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATTACTTATGCTGATCCGTCTGTGGTTGATAAAGTCATTGAGGATTCTCATATCATCAATGCCAAACAAGTATGGGATGTTTTTTATATGATGTCTTTGCATAGGATTTTATGCGTTTTGTTTCGATTTTAG 381 0.4042 GSGEQNDVGRAFNHRDEHEHEQQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINAKQVWDVFYMMSLHRILCVLFRF 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66122g00001 126 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 107 IPR000504 GO:0003723
Trme66122g00001 126 SMART rrm1_1 39 111 IPR000504 GO:0003723
Trme66122g00001 126 SUPERFAMILY RNA-binding domain, RBD 26 100 IPR035979 GO:0003676
Trme66122g00001 126 Gene3D - 4 109 IPR012677 -
Trme66122g00001 126 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 100 IPR000504 GO:0003723
Trme66122g00001 126 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 11 107 - -
Trme66122g00001 126 MobiDBLite consensus disorder prediction 15 38 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66122g00001 34 113 Eukaryotic Initiation Factors Gene Family AT1G71770 34.146 2.30e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme66122g00001 K12741 - gmx:113001701 176.022