Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6607g00001 ATGATTTTGGGAAATGCTGTCAATATTTGCTGCATTGGTCCTAACGATTTTGAGTCCGAGTATAGCTATGATATAATGGCTAAATCTGAGACATGCAACTTGAAATTACAGTCTTTTGCGAAGAACGTCCGACGATTTACTATAGCAACTCTTTCATCAGGGTCCCTTGTGATTCCAGTTGGTTCTTCTGAACCTCTCAAGCTGGAAATTTGCATAACACCCCCCATGATGCAAATCTATGCAAAGAAGTACTTCAATGGAAAGATGATCCCATTGAGAGTTAAGCGTTCAGACACAATAGTCAATGTGAAGAAGAAGATTACTGAAAAGGAAGGGATCCCAGTGGACCAACAACGTCTGATATTTGACGGTGTGCAACTAAATGATAAGCTGACCGTCGCCAATTACGACATCCAAGAGCTATCAACCGTCCACCTTATCCTTCGCTTGAGTGGGAGCTAG 462 0.4199 MILGNAVNICCIGPNDFESEYSYDIMAKSETCNLKLQSFAKNVRRFTIATLSSGSLVIPVGSSEPLKLEICITPPMMQIYAKKYFNGKMIPLRVKRSDTIVNVKKKITEKEGIPVDQQRLIFDGVQLNDKLTVANYDIQELSTVHLILRLSGS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6607g00001 153 ProSitePatterns Ubiquitin domain signature. 104 129 IPR019954 -
Trme6607g00001 153 ProSiteProfiles Ubiquitin domain profile. 77 153 IPR000626 GO:0005515
Trme6607g00001 153 PANTHER UBIQUITIN 77 152 - -
Trme6607g00001 153 FunFam 2'-5'-oligoadenylate synthase-like protein 2 79 150 - -
Trme6607g00001 153 Pfam Ubiquitin family 85 150 IPR000626 GO:0005515
Trme6607g00001 153 SUPERFAMILY Ubiquitin-like 72 152 IPR029071 -
Trme6607g00001 153 PRINTS Ubiquitin signature 109 129 IPR019956 -
Trme6607g00001 153 PRINTS Ubiquitin signature 130 151 IPR019956 -
Trme6607g00001 153 PRINTS Ubiquitin signature 88 108 IPR019956 -
Trme6607g00001 153 SMART ubq_7 77 149 IPR000626 GO:0005515
Trme6607g00001 153 Gene3D - 73 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6607g00001 Trme-Chr6607 1289 1918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6607g00001 77 153 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 61.039 5.20e-24 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6607g00001 - K08770 mtr:11432566 159.458