Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme66025g00001 GAAGAAGGAGAAGAAATAGAAGAAGAGGGAGAACAAGAGCAAGAGCAGGAAGAAGAAGAAACAGAAGAGGAAGAAGAAGCTGAAGTGGATGGTGATGGTGGTTTGACAGAAGATAAAGAGGCTGCTGAGGAGATGGAGGTGACGGAGGAGGAGCAGAGTGTGAGTGGTGGGAAAAGGAAGCGTGGGAATGGGAAGAATTCGAAGNNNNNNNNNNTNNNNNNNNNNAAGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTTGATGGTGGTGACCTTGTGCTCTGTGACCGCAGGGGTTGCCCCAAGGCTTACCACCCTTCCTGCATTAATCGTGACGAGGCCTTCTTCCAATCCAAAGGAAAGTGGAATTGTGGGTTTATTTCAGTTTCAGTGTTTGGTTTTACTTTTTAG 414 0.4396 EEGEEIEEEGEQEQEQEEEETEEEEEAEVDGDGGLTEDKEAAEEMEVTEEEQSVSGGKRKRGNGKNSKXXXXXXXKKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFQSKGKWNCGFISVSVFGFTF 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme66025g00001 137 SMART PHD_3 83 129 IPR001965 -
Trme66025g00001 137 MobiDBLite consensus disorder prediction 1 33 - -
Trme66025g00001 137 Coils Coil 3 30 - -
Trme66025g00001 137 SUPERFAMILY FYVE/PHD zinc finger 80 126 IPR011011 -
Trme66025g00001 137 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 8 126 - -
Trme66025g00001 137 CDD PHD5_NSD 83 125 - -
Trme66025g00001 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 135 IPR013083 -
Trme66025g00001 137 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme66025g00001 Trme-Chr66025 259 847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme66025g00001 82 127 PHD Transcription Factor Family AT2G36720 41.304 2.18e-08 49.7