Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6601g00001 TCTTTATTACCATCTGAGGACCCAGTTCCTCCAGAAAAAGCACCATCAAATTCTCCACCACCATTGCCAACAGCACCGCCACCTCATTCTTCGCCACCACCTTCGCCGTCTTATTCTCCACCACCTTCTCTATCACCACCGCCGCAAGCGCAATCTCCACCGCCACATTCTTCGCCACCTCCATCAAAAGTTTCACCTCCACCTTCTCAATCGTCACCGCCTACAAAACCGACATTGTCTCCGCCTCCATCATTTTCACCACCAYCACCAGTCGGCAATAATTCTCCCCCTCCTTCACAATCAAATTCCCCTCCTCAAGTTCCGTCCWTACCTTCGCCCTCTTCCAAAACTAGTCCTCCCCCGCCGCAAAATCGTCCTTCACCGCCACAATCATCATCAGGTTCCCCAAGCTCCCGTTCAAAACCAAGCCCTCCTCCTTCCAAAAGCAACTCTCTATCCAAACAGCCCTCCTCCAATGATAATATAGGACAATACATTGGTTTTGCTATCGCAGCAGTTTTTGTTCTCGCATTTATTGCATTCATTCTTTTTTTCATTTTAAAAAGAAAAGACAGACGAGGGAATTTCTATGGTATGCCACCCCATATGAAACCTCAAATGAATGGAGATGTGCATTATTATGTAGAGTCGCCGGGTTTTGGATATAATGTAGGTGCAATGCAACATATGAGAACTCCTTCAGACACAACACAACAACAAATTAGTGGTGGCCAAATAGTTTTTAGTTATGACAATGTTGCTAAAATTACTAACGGGTTTTCAAGTGAAAACGTGATAGGAGAAGGAGGTTTTGGGTGTGTTTACAAGGCTTCATTACCCGATGGTAGAATTGGAGCAGTTAAGTTGTTGAAGGCTGGTAGTGGTCAAGGAGAAAGAGAGTTTAGAGCAGAGGTTGATACTATTAGTCGTGTTCATCATCGACATTTGGTATCTTTGATCGGTTATTGTATATCTGAGCAACAAAGAGTTCTCATTTATGAGTTTGTTCCTAATGGAAATCTTGATCAACATTTGCATGGAAGTGCATGGGATGTTTTGGATTGGCCCAAGAGGATGAAGATAGCAATTGGTGCTGCAAGGGGCCTTGCATATCTACATGAAGGCTGTAACCCAAAGATTATTCACAGAGATATTAAGTCATCGAATATACTTTTGGACAATGCTTATGAGGCACAG 1197 0.4369 SLLPSEDPVPPEKAPSNSPPPLPTAPPPHSSPPPSPSYSPPPSLSPPPQAQSPPPHSSPPPSKVSPPPSQSSPPTKPTLSPPPSFSPPXPVGNNSPPPSQSNSPPQVPSJPSPSSKTSPPPPQNRPSPPQSSSGSPSSRSKPSPPPSKSNSLSKQPSSNDNIGQYIGFAIAAVFVLAFIAFILFFILKRKDRRGNFYGMPPHMKPQMNGDVHYYVESPGFGYNVGAMQHMRTPSDTTQQQISGGQIVFSYDNVAKITNGFSSENVIGEGGFGCVYKASLPDGRIGAVKLLKAGSGQGEREFRAEVDTISRVHHRHLVSLIGYCISEQQRVLIYEFVPNGNLDQHLHGSAWDVLDWPKRMKIAIGAARGLAYLHEGCNPKIIHRDIKSSNILLDNAYEAQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6601g00001 399 Gene3D Transferase(Phosphotransferase) domain 1 336 399 - -
Trme6601g00001 399 MobiDBLite consensus disorder prediction 130 161 - -
Trme6601g00001 399 SUPERFAMILY Protein kinase-like (PK-like) 236 396 IPR011009 -
Trme6601g00001 399 Gene3D Phosphorylase Kinase; domain 1 222 335 - -
Trme6601g00001 399 MobiDBLite consensus disorder prediction 1 161 - -
Trme6601g00001 399 MobiDBLite consensus disorder prediction 1 129 - -
Trme6601g00001 399 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 172 399 IPR047117 -
Trme6601g00001 399 Pfam Protein tyrosine and serine/threonine kinase 263 394 IPR001245 GO:0004672|GO:0006468
Trme6601g00001 399 SMART serkin_6 260 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6601g00001 399 ProSiteProfiles Protein kinase domain profile. 260 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6601g00001 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Trme6601g00001 399 FunFam Proline-rich receptor-like protein kinase PERK8 232 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6601g00001 Trme-Chr6601 106 1964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6601g00001 166 399 Trihelix Transcription Factor Family AT1G23540 50.189 1.97e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trme6601g00001 PK_Tyr_Ser-Thr 1.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6601g00001 - - tpra:123908299 375.17