Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme659395g00001 CTTCTAGATTTCAAGATGAACGCTAAGGTTTCGGATTTCGGGTTATCTCGTTTGGCTCAAACGGATATGAGTCATATCTCAACTTGTGCTCAAGGAACACTTGGTTACCTTGATCCTGAGTATTATAGAAACTATCAGTTAACTGATAAGAGTGATGTTTATAGCTTCGGAGTTGTGTTGCTGGAGCTCTTGACGTCTCAGAAGGCGATAGATTTTAACAGGGCGTCGGATGATGTGAACTTGGCAGTTTATGTT 255 0.4118 LLDFKMNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRASDDVNLAVYV 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme659395g00001 85 Gene3D Transferase(Phosphotransferase) domain 1 1 84 - -
Trme659395g00001 85 ProSiteProfiles Protein kinase domain profile. 1 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme659395g00001 85 Pfam Protein tyrosine and serine/threonine kinase 1 66 IPR001245 GO:0004672|GO:0006468
Trme659395g00001 85 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 83 IPR044652 GO:0004672
Trme659395g00001 85 SUPERFAMILY Protein kinase-like (PK-like) 1 68 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme659395g00001 Trme-Chr659395 2 256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme659395g00001 1 85 Receptor kinase-like Gene Family AT5G02070 72.222 8.34e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme659395g00001 PK_Tyr_Ser-Thr 3.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme659395g00001 - - gmx:100305415 166.007