Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6591g00001 ATCAGGCAAAACATTGAGGAGACTGTTGGTATTGGAAAGGGAGTTACTCAACTCTATGCTACCATTGATTTGGAGAAAGCAAGAGTCGGAAGGACAAGGATTATTGAAAAGGAACATAATAATCCAAAATGGTATGAGTCGTTTCACATTTACTGTGCTCATTTGGCTTCAAATATCATATTCACTGTGAAAGATGATAATCCTATTGGAGCGACTTTAATTGGAAGAGCTTATGTGCCTGTCGAGGAGGTCTTGGGTGGTGAGGAAATAGATAGATGGGTGGAAATTTTGGATGAGGAAAGAAATCCGATAGAAGAGGGTTCAAAGATCCATGTGAAACTGCAATATTTTGATGTTACAAAAGACCGAAGCTGGGCTCGAGGCATTCAAAGTGCTAAATTTCCTGGAGTTCCGTATACTTTCTTCTCGCAGAGGCAAGGATGTAAGGTATCTCTTTACCAAGATGCTCATGTGCCGGATAACTTTGTCCCTAAAATATCACTCTCTGGTGGCAAGACTTACCAGCCTCATAGGTGTTGGGAGGATATTTTCGATGCAATCACGAATGCAAAGCATTTGATATACATTACTGGTTGGTCTGTTTATACCGAAATTTCGTTGGTGAGGGATTCTAGGAGGCCAAAGGCCGGGGGAGACGCAACACTTGGTGAGCTTCTCAAGAAAAAGGCCGGTGAAGGTGTTAGGGTTTTGATGCTGGTTTGGGATGATAGAACATCGGTCGGTTTGTTGAAAAAGGATGGGTTGATGGCTACTCATGACGAAGAAACCGCACAGTTCTTTGATGGGACCGATGTCCATTGTGTTTTATGCCCCCGCAATCCTGATGATGGTGGTAGCGTCATTCAAGATTTACAAATTTCCACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACAGTGAGTTACCTGGTGGAGGGTCAGATAAGCGAAGAATTATGAGTTTTGTTGGGGGTCTTGACCTTTGTGATGGAAGATACGATACTGCGTTCCATTCACTTTTCAGAACCCTTGACACGGCACACCATGATGATTTTCATCAACCCAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCAAGGGAACCTTGGCATGACATTCACTCCCGGCTTGAAGGACCTATCGCTTGGGATGTTTTGTTTAACTTTGAGCAGCGATGGAGGAAACAAGGTGGGAAGGATATACTTCTCAATCTGAGAGAGCTTGAAGATTCTATTATTCCCCCATCCCCGGTAATGTTTCCCGATGATCAGGAGACATGGAATGTTCAGTTGTTTAGATCTATTGATGGTGGAGCTGCTTTCGGGTTCCCAGAAACTCCCGAAGATGCTGCGAGAGCCGGTCTTGTTAGTGGAAAGGACAATATCATCGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGACGCGCAAAGAACTTTATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCTTGGAGTGGTGATGATATTAAGCCTGAAGAAATTGGTGCTTTGCATGTAATCCCAAAGGAACTTTCACTTAAGA 1564 0.4309 IRQNIEETVGIGKGVTQLYATIDLEKARVGRTRIIEKEHNNPKWYESFHIYCAHLASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEIDRWVEILDEERNPIEEGSKIHVKLQYFDVTKDRSWARGIQSAKFPGVPYTFFSQRQGCKVSLYQDAHVPDNFVPKISLSGGKTYQPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKAGGDATLGELLKKKAGEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFDGTDVHCVLCPRNPDDGGSVIQDLQISTMFTHHQKIVVVDSELPGGGSDKRRIMSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILLNLRELEDSIIPPSPVMFPDDQETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSGDDIKPEEIGALHVIPKELSLK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6591g00001 521 Pfam C2 domain 13 96 IPR000008 -
Trme6591g00001 521 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 333 IPR001736 GO:0003824
Trme6591g00001 521 Pfam Phospholipase D Active site motif 295 333 IPR001736 GO:0003824
Trme6591g00001 521 Gene3D Endonuclease Chain A 168 413 - -
Trme6591g00001 521 SMART C2_3c 4 93 IPR000008 -
Trme6591g00001 521 SUPERFAMILY Phospholipase D/nuclease 120 415 - -
Trme6591g00001 521 FunFam Phospholipase D delta 170 414 - -
Trme6591g00001 521 ProSiteProfiles C2 domain profile. 1 94 IPR000008 -
Trme6591g00001 521 Gene3D C2 domain 4 128 IPR035892 -
Trme6591g00001 521 SMART pld_4 295 333 IPR001736 GO:0003824
Trme6591g00001 521 CDD C2_plant_PLD 12 117 - -
Trme6591g00001 521 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 119 IPR035892 -
Trme6591g00001 521 PANTHER PHOSPHOLIPASE D 16 521 IPR015679 -
Trme6591g00001 521 SUPERFAMILY Phospholipase D/nuclease 420 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6591g00001 Trme-Chr6591 403 1966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6591g00001 1 521 Phospholipase D Gene Family (Wang group) AT1G52570 82.726 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6591g00001 K01115 - gmx:100786410 1003.05