Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65883g00001 AACACTAGGGAAACTGCGTTTGCCATCAGGAAGTTGCCCTTGATCAAGGCCAAAAGGTACTTGGAGGACGTTCTTGCACACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGTCGGGAGGACTGCCCAGGCCAAGAATAGACACTCTAATGGACAAGGAAGGTGGCCCGCCAAGTCTGCAAAGTTCATCCTTGACTTACTCAAGAATGCTGAGAGCAATGCAGAAGTGAAAGGTTTGGATGTTGATGCCCTATATGTTTCACATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACAGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCATGCCACATTGAGTTGATTTTATCTGAAAAGGAAGAGGCTGTCAGGAAGGAGGTATTTTTGTTCGCCCTGTTTTTCTTTTAA 432 0.4583 NTRETAFAIRKLPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVRKEVFLFALFFF 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65883g00001 143 CDD Ribosomal_L22 1 124 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trme65883g00001 143 Pfam Ribosomal protein L22p/L17e 1 125 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trme65883g00001 143 ProSitePatterns Ribosomal protein L22 signature. 100 124 IPR018260 GO:0003735|GO:0005840|GO:0006412
Trme65883g00001 143 PANTHER 60S RIBOSOMAL PROTEIN L17 1 134 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trme65883g00001 143 Gene3D Ribosomal protein L22/L17 1 136 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trme65883g00001 143 SUPERFAMILY Ribosomal protein L22 1 127 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trme65883g00001 143 NCBIfam 50S ribosomal protein L22 1 127 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65883g00001 Trme-Chr65883 245 843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65883g00001 1 134 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 91.045 6.54e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65883g00001 K02880 - gmx:100499784 265.003