Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65881g00001 ATGAAGTACCAAGAAAATGGACCTAAAGGGCCACTATGGGAGGAGATTTCAAGCTTGATGAAGAACTTGGGGTACAATAGGAATGCAAAGAGGTGCAAAGAGAAATGGGAGAATATCAACAAGTATTTCAAGAAAGTGAAAGAAAGCAACAAGAAAAGGCCAGAAGATTCAAAGACATGTCCTTATTTTCACCAGCTGGATGCTCTATATAGGGAGAAGAACAAGGGAGAGGGTGCTGCGGTAGCGAGGCCTGAGGGAACGATGATGGCGCCATTGATGGTTCAGCCGGAGCAGCAGTGGCCTCCACAGCAGCCACCANNNNNTNNNNNNNNNNTNNNNNNNNNNGAGGATGCCGAGAAAGATAGGCCGCACCGTGATGAAGAAGGGTTTTATGATGACGACGACGGTGATGATGAAGAAGAGGAAGATGAAGGAAGTGACAACTATGAAGTGGTTGCCAACAAACCACCCCCACCTCAATAA 483 0.4451 MKYQENGPKGPLWEEISSLMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKGEGAAVARPEGTMMAPLMVQPEQQWPPQQPPXXXXXXXXXEDAEKDRPHRDEEGFYDDDDGDDEEEEDEGSDNYEVVANKPPPPQ 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65881g00001 160 PANTHER FI21293P1 2 117 - -
Trme65881g00001 160 CDD GT1 2 47 - -
Trme65881g00001 160 Gene3D - 1 45 - -
Trme65881g00001 160 MobiDBLite consensus disorder prediction 74 160 - -
Trme65881g00001 160 MobiDBLite consensus disorder prediction 115 129 - -
Trme65881g00001 160 Pfam Myb/SANT-like DNA-binding domain 4 69 IPR044822 -
Trme65881g00001 160 MobiDBLite consensus disorder prediction 130 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65881g00001 Trme-Chr65881 284 766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65881g00001 1 69 Trihelix Transcription Factor Family AT1G76880 49.275 1.36e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trme65881g00001 Myb_DNA-bind_4 7.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65881g00001 - - psat:127127275 229.18