Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6586g00001 ATGTCTTCCTCAAACCCTTTCTCTCCACCACCACCACCACCACCACCACCACTTCCTTACCTCACCAATCTCGGCTTCGGTTACTCCATAGCCATAGCTCTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNACCACCAAGATGACGGCGTGGTTTTACCGAGGGTAATTTTTGTAGCAGAAGAAGATGAAGATCGAGACGATGTCGTTTTAGGTTTGGATCAGAATGTGATAAATTCGTATCCGAGGTTACAGTATGGTAAAGATTTGGGACATGATAGTACTTGTTCGATCTGTTTATGTGAGTATAAGGATTTGGAGATGTTAAGGATGATGCCGGAATGTAGACACTATTTTCATCTTTGTTGTCTTGATTCATGGTTGAAACTTAATGGTTCTTGTCCCGTTTGTCGGAATTCGCCTATGCCTACGCCGTTATCTACGCCGTTACAAGAAGTTGTTCCTCTTTCTCATTACATTGGTGAAAGAAGGGGGTTTGATGATGTGATTTAG 588 0.3503 MSSSNPFSPPPPPPPPPLPYLTNLGFGYSIAIALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQDDGVVLPRVIFVAEEDEDRDDVVLGLDQNVINSYPRLQYGKDLGHDSTCSICLCEYKDLEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRGFDDVI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6586g00001 195 Coils Coil 34 34 - -
Trme6586g00001 195 SUPERFAMILY RING/U-box 106 168 - -
Trme6586g00001 195 Coils Coil 71 74 - -
Trme6586g00001 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 168 IPR013083 -
Trme6586g00001 195 PANTHER RING-H2 FINGER PROTEIN ATL67 1 189 IPR044289 GO:0016567|GO:0016740
Trme6586g00001 195 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Trme6586g00001 195 SMART ring_2 121 162 IPR001841 -
Trme6586g00001 195 Pfam Ring finger domain 120 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6586g00001 Trme-Chr6586 33 880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6586g00001 97 189 C3H Transcription Factor Family AT2G35910 53.684 1.54e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6586g00001 - - vvo:131627490 247.669