Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65869g00001 ATGGGTTTTGATAGGGTAAGGTCAACTCCACCTGCTGGTACAATGGGTTATCTTGATCCTTTTTATGTAACTCCTGATAATTTGAGTACTAAGATTGATGTTTTTAGTTTTGGGATTTTGTTGTTGGAGATTATAAGTGGTAGGAAAGCAATTGATGTTGCTTATTCGCCGCCGTCTGTTGTGGATTGGGCTATTCCACTTATTAANNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGATGCTTTTGTGAGGAAACAATTGGCTTTGATTGCGGCGAAATGTGTTAGGTCTTGTAGGGAAAGAAGACCTTCGATGAATGAGGTTGTTAATTGGCTTTGTGGGTTGT 364 0.3407 MGFDRVRSTPPAGTMGYLDPFYVTPDNLSTKIDVFSFGILLLEIISGRKAIDVAYSPPSVVDWAIPLIXXXXXXXXXXXXXXXXXDAFVRKQLALIAAKCVRSCRERRPSMNEVVNWLCGL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65869g00001 121 SUPERFAMILY Protein kinase-like (PK-like) 6 119 IPR011009 -
Trme65869g00001 121 PANTHER OS01G0253100 PROTEIN 12 118 - -
Trme65869g00001 121 Gene3D Transferase(Phosphotransferase) domain 1 3 121 - -
Trme65869g00001 121 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65869g00001 Trme-Chr65869 69 432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65869g00001 11 118 Receptor kinase-like Gene Family AT3G59420 45.370 7.96e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trme65869g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65869g00001 - - gmx:100805692 177.563